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Model Improvements #2

Merged
merged 18 commits into from
Mar 7, 2022
Merged

Model Improvements #2

merged 18 commits into from
Mar 7, 2022

Commits on Jan 6, 2022

  1. Changed default window size from 12 to 15

    @dominikstanojevic
    dominikstanojevic committed Jan 6, 2022
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Commits on Jan 12, 2022

  1. Added q_indices for training

    @dominikstanojevic
    dominikstanojevic committed Jan 12, 2022
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Commits on Jan 19, 2022

  1. Changing dtypes in positional encodings. 

    Fixes in inference.py
    @dominikstanojevic
    dominikstanojevic committed Jan 19, 2022
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  2. Changes to the inference pipeline

    @dominikstanojevic
    dominikstanojevic committed Jan 19, 2022
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Commits on Jan 28, 2022

  1. Updated model version

    @dominikstanojevic
    dominikstanojevic committed Jan 28, 2022
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  2. Rmoved features parameter from RFDataset. 

    During training we call RockfishLightningCLI instead of its base class LightningCLI.
    @dominikstanojevic
    dominikstanojevic committed Jan 28, 2022
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  3. Removed linked data.features argument in RockfishLightningCLI

    @dominikstanojevic
    dominikstanojevic committed Jan 28, 2022
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Commits on Jan 30, 2022

  1. Few fixes

    @dominikstanojevic
    dominikstanojevic committed Jan 30, 2022
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Commits on Feb 11, 2022

  1. Inference using iterable datasets

    @dominikstanojevic
    dominikstanojevic committed Feb 11, 2022
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  2. GRUDecoder written

    @dominikstanojevic
    dominikstanojevic committed Feb 11, 2022
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Commits on Feb 13, 2022

  1. Preparation for training transformer model

    @dominikstanojevic
    dominikstanojevic committed Feb 13, 2022
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  2. Placining repeats tensor to the same device as input

    @dominikstanojevic
    dominikstanojevic committed Feb 13, 2022
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  3. Merge branch 'improvements' of github.com:dominikstanojevic/no-tombo-… 

    …mod into improvements
    @dominikstanojevic
    dominikstanojevic committed Feb 13, 2022
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Commits on Feb 15, 2022

  1. Added example binning during inference

    @dominikstanojevic
    dominikstanojevic committed Feb 15, 2022
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Commits on Feb 20, 2022

  1. Fixing total parameter for tqdm

    @dominikstanojevic
    dominikstanojevic committed Feb 20, 2022
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  2. Merge branch 'improvements' of github.com:dominikstanojevic/no-tombo-… 

    …mod into improvements
    @dominikstanojevic
    dominikstanojevic committed Feb 20, 2022
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Commits on Feb 22, 2022

  1. Fixes for iterative inference

    @dominikstanojevic
    dominikstanojevic committed Feb 22, 2022
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Commits on Mar 7, 2022

  1. Iterative inference used multiprocessing instead of DataParallel 

    Reorganized code - datasets, inference, model
    @dominikstanojevic
    dominikstanojevic committed Mar 7, 2022
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