v0.14.5

[v0.14.5]

Added

• Support for semi-enzymatic digests (database.enzyme.semi_enzymatic parameter) by @FriedLabJHU in #94
• Ability to directly export matched fragment ions (e.g. for spectral library or rescoring) with the --annotate-matches CLI option. This is compatible with the --parquet CLI option as well. Annotations will be written to matched_fragments.sage.tsv or matched_fragments.sage.parquet. by @grosenberger-bruker in #101
• Sage sends basic telemetry data (version of Sage, run time, OS, # of CPU cores, # of peptides in database, whether LFQ is used) to a remote database. No information about your actual data is sent - e.g. identifications, quantities, organism, or modifications, etc are NOT tracked or reported. This data will be used to help focus efforts on improving Sage and figuring which features are most used. Please take a look at crates/sage-cli/src/telemetry.rs to see exactly what is sent! You can disable sending telemetry data by using the --disable-telemetry-i-dont-want-to-improve-sage CLI flag.

Changed

• Modified visibility on some crate internals to support the sagepy project by @theGreatHerrLebert in #103
• Added psm_id field to various output files to match the new --annotate-matches option.

Removed

• Removed the ms1_intensity field from CSV output, since it is essentially useless

New Contributors

• @FriedLabJHU made their first contribution in #94
• @theGreatHerrLebert made their first contribution in #103
• @grosenberger-bruker made their first contribution in #101

Full Changelog: v0.14.4...v0.14.5