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Taras/nexflow fsync #502

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merged 3 commits into from
Oct 16, 2024
Merged

Taras/nexflow fsync #502

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0959b19
add nextflow option to enable fsync in workflow tasks
TarasPriadka Oct 12, 2024
aaebc52
fix: bump version
TarasPriadka Oct 16, 2024
ec9e8bc
fix comment
TarasPriadka Oct 16, 2024
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8 changes: 8 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -16,6 +16,14 @@ Types of changes

# Latch SDK Changelog

## 2.53.7 - 2024-10-16

### Added

* Nextflow
- bump nf runtime version to 2.3.0
- use `NXF_ENABLE_FS_SYNC` flag in workflows to enable using sync on task finish

## 2.53.6 - 2024-10-11

### Added
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2 changes: 1 addition & 1 deletion latch_cli/constants.py
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Expand Up @@ -22,7 +22,7 @@ class LatchConstants:
base_image: str = (
"812206152185.dkr.ecr.us-west-2.amazonaws.com/latch-base:fe0b-main"
)
nextflow_latest_version: str = "v2.2.0"
nextflow_latest_version: str = "v2.3.0"

file_max_size: int = 4 * Units.MiB
file_chunk_size: int = 64 * Units.MiB
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1 change: 1 addition & 0 deletions latch_cli/nextflow/workflow.py
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Expand Up @@ -146,6 +146,7 @@ def nextflow_runtime(pvc_name: str, {param_signature}) -> None:
"NXF_OPTS": "-Xms{heap_initial}M -Xmx{heap_max}M -XX:ActiveProcessorCount={cpu}",
"NXF_DISABLE_CHECK_LATEST": "true",
"NXF_ENABLE_VIRTUAL_THREADS": "false",
"NXF_ENABLE_FS_SYNC": "true",
}}
if {upload_command_logs}:
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2 changes: 1 addition & 1 deletion setup.py
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Expand Up @@ -13,7 +13,7 @@

setup(
name="latch",
version="v2.53.6",
version="v2.53.7",
author_email="[email protected]",
description="The Latch SDK",
packages=find_packages(),
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