Address deprecation warning in scico.flax
#514
Workflow file for this run
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| # Install scico requirements and run short versions of example scripts | |
| name: test examples | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| # Allow this workflow to be run manually from the Actions tab | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| name: test examples (ubuntu) | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| # Check-out the repository under $GITHUB_WORKSPACE | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: recursive | |
| # Set up conda/mamba environment | |
| - name: Set up mambaforge | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: test-env | |
| use-mamba: true | |
| python-version: "3.9" | |
| # Configure conda environment cache | |
| - name: Set up conda environment cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.CONDA }}/envs | |
| key: conda-${{ runner.os }}-${{ runner.arch }}-${{ hashFiles('requirements.txt') }}-${{ hashFiles('dev_requirements.txt') }}-${{ hashFiles('examples/examples_requirements.txt') }}-${{ env.CACHE_NUMBER }} | |
| env: | |
| CACHE_NUMBER: 0 # Increase this value to force cache reset | |
| id: cache | |
| # Display environment details | |
| - name: Display environment details | |
| run: | | |
| conda info | |
| printenv | sort | |
| # Install required system package | |
| - name: Install required system package | |
| run: sudo apt-get install -y libopenblas-dev | |
| # Install dependencies in conda environment | |
| - name: Install dependencies | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| run: | | |
| mamba install -c conda-forge pytest pytest-cov | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| pip install -r dev_requirements.txt | |
| mamba install -c astra-toolbox astra-toolbox | |
| mamba install -c conda-forge pyyaml | |
| pip install --upgrade --force-reinstall scipy>=1.6.0 # Temporary fix for GLIBCXX_3.4.30 not found in conda forge version | |
| pip install -r examples/examples_requirements.txt | |
| # Install package to be tested | |
| - name: Install package to be tested | |
| run: pip install -e . | |
| # Run example test | |
| - name: Run example test | |
| run: | | |
| ${GITHUB_WORKSPACE}/examples/scriptcheck.sh -e -d -t -g |