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Fix warnings and errors generated when running doxygen. #527

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merged 6 commits into from
Nov 16, 2018
Merged

Fix warnings and errors generated when running doxygen. #527

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a5aa32e
Fix warnings and errors generated when running doxygen.
KineticTheory Nov 12, 2018
115021b
Try to convince clang-format via travis to pass the style check.
KineticTheory Nov 14, 2018
8817b41
Merge branch 'autodoc-fixes' of github.com:KineticTheory/Draco into a…
KineticTheory Nov 14, 2018
a93342d
Fix comment indentation.
KineticTheory Nov 14, 2018
869c879
Merge remote-tracking branch 'upstream/develop' into autodoc-fixes
KineticTheory Nov 14, 2018
1eb04db
More autodoc cleanup to make it easier for Jayenne to use the same ma…
KineticTheory Nov 16, 2018
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147 changes: 94 additions & 53 deletions Copyright
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Expand Up @@ -3,75 +3,116 @@ DRACO Software:
Terms and Conditions of Use
----------------------------------------

Please read these terms and conditions of use carefully before using
this software. This code is unclassified and has been assigned LA-CC-16-016.
Please read these terms and conditions of use carefully before using this
software. This code is unclassified and has been assigned LA-CC-16-016.

Copyright
--------------------

Copyright (C) 2016-2018 Los Alamos National Security, LLC.
All rights reserved.

Copyright 2016. Los Alamos National Security, LLC. This software was
produced under U.S. Government contract DE-AC52-06NA25396 for Los
Alamos National Laboratory (LANL), which is operated by Los Alamos
National Security, LLC for the U.S. Department of Energy. The
U.S. Government has rights to use, reproduce, and distribute this
software. NEITHER THE GOVERNMENT NOR LOS ALAMOS NATIONAL SECURITY,
LLC MAKES ANY WARRANTY, EXPRESS OR IMPLIED, OR ASSUMES ANY LIABILITY
FOR THE USE OF THIS SOFTWARE. If software is modified to produce
derivative works, such modified software should be clearly marked, so
as not to confuse it with the version available from LANL.

Additionally, redistribution and use in source and binary forms, with
or without modification, are permitted provided that the following
conditions are met:

- Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.

- Redistributions in binary form must reproduce the above copyright
notice, this list of conditions and the following disclaimer in the
documentation and/or other materials provided with the distribution.

- Neither the name of Los Alamos National Security, LLC, Los Alamos
National Laboratory, LANL, the U.S. Government, nor the names of its
contributors may be used to endorse or promote products derived from
this software without specific prior written permission.

THIS SOFTWARE IS PROVIDED BY LOS ALAMOS NATIONAL SECURITY, LLC AND
CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND
FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL LOS
ALAMOS NATIONAL SECURITY, LLC OR CONTRIBUTORS BE LIABLE FOR ANY
DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER
IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
Copyright (C) 2016-2018 Los Alamos National Security, LLC. All rights reserved.

Copyright 2016. Los Alamos National Security, LLC. This software was produced
under U.S. Government contract DE-AC52-06NA25396 for Los Alamos National
Laboratory (LANL), which is operated by Los Alamos National Security, LLC for
the U.S. Department of Energy. The U.S. Government has rights to use, reproduce,
and distribute this software. NEITHER THE GOVERNMENT NOR LOS ALAMOS NATIONAL
SECURITY, LLC MAKES ANY WARRANTY, EXPRESS OR IMPLIED, OR ASSUMES ANY LIABILITY
FOR THE USE OF THIS SOFTWARE. If software is modified to produce derivative
works, such modified software should be clearly marked, so as not to confuse it
with the version available from LANL.

Additionally, redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:

- Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.

- Redistributions in binary form must reproduce the above copyright notice, this
list of conditions and the following disclaimer in the documentation and/or
other materials provided with the distribution.

- Neither the name of Los Alamos National Security, LLC, Los Alamos National
Laboratory, LANL, the U.S. Government, nor the names of its contributors may
be used to endorse or promote products derived from this software without
specific prior written permission.

THIS SOFTWARE IS PROVIDED BY LOS ALAMOS NATIONAL SECURITY, LLC AND CONTRIBUTORS
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
ARE DISCLAIMED. IN NO EVENT SHALL LOS ALAMOS NATIONAL SECURITY, LLC OR
CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY,
OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING
IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY
OF SUCH DAMAGE.


Additional Copyright Information:
----------------------------------------

The Draco software suite links against external libraries. Copyrights
to these associated software packages may are listed below:
The Draco software suite links against external libraries. Copyrights to these
associated software packages may are listed below:

1. Various MPI implementations (OpenMPI, MPICH, Microsoft MPI, Intel
MPI, etc.); https://www.open-mpi.org/community/license.php
1. Various MPI implementations (OpenMPI, MPICH, Microsoft MPI, Intel MPI, etc.);
https://www.open-mpi.org/community/license.php

2. Gnu Scientific Library - GSL is distributed under the terms of the
GNU General Public License (GPL) - http://www.gnu.org/software/gsl/
An open source Message Passing Interface implementation. The Open MPI Project
is an open source Message Passing Interface implementation that is developed
and maintained by a consortium of academic, research, and industry
partners. Open MPI is therefore able to combine the expertise, technologies,
and resources from all across the High Performance Computing community in
order to build the best MPI library available. Open MPI offers advantages
for system and software vendors, application developers and computer science
researchers.

3. LAPACK - http://www.netlib.org/lapack/LICENSE.txt
or package providing this functionality (e.g.: Intel MKL)
2. Gnu Scientific Library - GSL is distributed under the terms of the GNU
General Public License (GPL) - http://www.gnu.org/software/gsl/

The GNU Scientific Library (GSL) is a numerical library for C and C++
programmers. It is free software under the GNU General Public License. The
library provides a wide range of mathematical routines such as random number
generators, special functions and least-squares fitting. There are over 1000
functions in total with an extensive test suite.

3. LAPACK - http://www.netlib.org/lapack/LICENSE.txt (or equivalent)

LAPACK version 3.X is a comprehensive FORTRAN library that does linear
algebra operations including matrix inversions, least squared solutions to
linear sets of equations, eigenvector analysis, singular value decomposition,
etc. It is a very comprehensive and reputable package that has found
extensive use in the scientific community.

4. Random123 -
https://www.deshawresearch.com/downloads/download_random123.cgi/Random123_License.txt

5. CUDA - http://docs.nvidia.com/cuda/eula/index.html#nvidia-cuda-toolkit-license-agreement
Random123 is a library of 'counter-based' random number generators (CBRNGs),
in which the Nth random number can be obtained by applying a stateless mixing
function to N instead of the conventional approach of using N iterations of a
stateful transformation.

5. CUDA -
http://docs.nvidia.com/cuda/eula/index.html#nvidia-cuda-toolkit-license-agreement

6. Qt - GNU Lesser General Public License (LGPL) version 3,
http://doc.qt.io/qt-5/opensourcelicense.html

7. Metis - http://glaros.dtc.umn.edu/gkhome/metis/metis/overview

METIS is a set of serial programs for partitioning graphs, partitioning
finite element meshes, and producing fill reducing orderings for sparse
matrices. The algorithms implemented in METIS are based on the multilevel
recursive-bisection, multilevel k-way, and multi-constraint partitioning
schemes.

8. ParMetis - http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview

ParMETIS is an MPI-based parallel library that implements a variety of
algorithms for partitioning unstructured graphs, meshes, and for computing
fill-reducing orderings of sparse matrices.

9. SuperLU-DIST - http://crd-legacy.lbl.gov/~xiaoye/SuperLU/

A general purpose library for the direct solution of large, sparse,
nonsymmetric systems of linear equations on high performance machines.
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