Update _spatial_expression.py

labsyspharm · Mar 1, 2024 · 07bcb19 · 07bcb19
1 parent cf169ff
commit 07bcb19
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/scimap/tools/_spatial_expression.py b/scimap/tools/_spatial_expression.py
@@ -6,7 +6,7 @@
 """
 !!! abstract "Short Description"
     `sm.tl.spatial_expression`: This function generates a neighborhood weighted matrix from spatial data, integrating expression values to assess local cellular environments. 
-    
+      
     It employs two approaches for neighborhood definition:
 
     - **Radius Method**: Identifies neighbors within a specified radius, enabling analyses based on physical proximity.
@@ -157,7 +157,7 @@ def spatial_expression (adata,
     
     # Calculate spatial expression using a 30-pixel radius
     adata = spatial_expression(adata, x_coordinate='X_centroid', y_coordinate='Y_centroid',
-                               method='radius', radius=30, use_raw=True,
+                               method='radius', radius=30, 
                                label='expression_radius_30')
 
     # Calculate spatial expression using 10 nearest neighbors