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paper: fixes
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kuadrat committed Dec 13, 2023
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2 changes: 1 addition & 1 deletion joss_paper/paper.bib
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Expand Up @@ -190,7 +190,7 @@ @article{petersen2021DynamicSimulationManagement
keywords = {Adaptive management,Biomass yields,carbon sequestration,Mountainous grasslands,Process-based modelling}
}

@incollection{huguenin_elie2017DuengungGrasland,
@article{huguenin_elie2017DuengungGrasland,
title = {{D{\"u}ngung von Grasland}},
booktitle = {{Grundlagen f{\"u}r die D{\"u}ngung landwirtschaftlicher Kulturen in der Schweiz (GRUD)}},
author = {{Huguenin-Elie}, Ilivier and Mosimann, Eric and Schlegel, Patrick and L{\"u}scher, Andreas and Kessler, Willy and Jeangros, Bernard},
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26 changes: 13 additions & 13 deletions joss_paper/paper.md
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Expand Up @@ -13,6 +13,7 @@ authors:
affiliation: 1
corresponding: true # (This is how to denote the corresponding author)
- name: Pierluigi Calanca
orcid: 0000-0003-3113-2885
equal-contrib: true
affiliation: 1
affiliations:
Expand Down Expand Up @@ -60,7 +61,7 @@ To give just a few examples:
interactions in grass/clover mixtures.
- The focus of PaSim [@graux2011DevelopmentPastureSimulation] is the
investigation of livestock production under climate change conditions.
- ModVege @[jouven2006ModelPredictingDynamics] is another mechanistic model
- ModVege [@jouven2006ModelPredictingDynamics] is another mechanistic model
that is designed to capture the dominant processes with a minimum of
required input parameters.
- The Moorepark St Gilles [@ruelle2018DevelopmentMooreparkSt] and
Expand All @@ -69,10 +70,9 @@ To give just a few examples:
but introducing more complexity.

The different existing grassland models vary in their formulation, but also
in the manner in which they are implemented and distributed, ranging from
incoherent sets of zipped script files being shared bilaterally among
researchers to professionally developed and maintained (open or closed)
software suites.
in the manner in which they are implemented and distributed, ranging from
sets of zipped script files being shared bilaterally among researchers to
professionally developed and maintained (open or closed) software suites.
With this large variability in implemented models, version control,
transparency and clear traceability of employed model implementations becomes
critical for the reproduction of scientific results.
Expand Down Expand Up @@ -104,7 +104,7 @@ simulations and providing different forms of output.
These classes and their functionalities are wrapped in high level functions
which streamline the most common use cases.
In addition to this core functionality, the package contains utilities for
some common tasks that arise in ecosystem modeling (and beyond), like setting
some common tasks that arise in ecosystem modelling (and beyond), like setting
up a clean directory structure, assessing model performance when compared to
a set of validation data and carrying out sweeps over parameter space in
order to aid model calibration.
Expand All @@ -114,9 +114,9 @@ order to aid model calibration.
The core model implementation follows the description by
@jouven2006ModelPredictingDynamics but it contains a number of extensions
that have proven valuable.
Use of any of these additions is completely optional, so the user is free to
work with the model in its original formulation or with any combination of
the provided extensions.
Use of any of these additions is optional, so the user is free to work with
the model in its original formulation or with any combination of the provided
extensions.
These additions include:

- Simulation of snow cover by use of a model by
Expand All @@ -127,7 +127,7 @@ These additions include:
decisions in the absence of such input data. The decision process is based
on work by @petersen2021DynamicSimulationManagement and
@huguenin_elie2017DuengungGrasland.
- Plant responses to elevated CO~2~ conditions. The evapotranspiration
- Plant responses to elevated CO~2~ conditions: The evapotranspiration
[@kruijt2008EffectsRisingAtmospheric] and photosynthetic rates
[@soltani2012ModelingPhysiologyCrop; @kellner2017CoupledHydrologicalplantGrowth]
of plants can be modified by the atmospheric CO~2~ concentration.
Expand All @@ -142,17 +142,17 @@ Publications discussing and validating these extensions are in preparation.

# Conclusion

The `growR` package enhances the grassland modeling landscape with a model
The `growR` package enhances the grassland modelling landscape with a model
implementation complete with analysis tools and utilities.
The distribution as an `R` package on [CRAN](https://cran.r-project.org/)
ensures an easy installation procedure and a relatively high standard of code
quality and documentation through CRAN's submission policies.

# Acknowledgements

The work of K.~K. has been supported by
The work of K.P.K. has been supported by
[Agroscope](https://www.agroscope.admin.ch/), the [National Center for
Climate Sevices (NCCS)[https://www.nccs.admin.ch/nccs/de/home.html] and the
Climate Sevices (NCCS)](https://www.nccs.admin.ch/nccs/de/home.html) and the
[Federal Office for Agriculture](https://www.blw.admin.ch/blw/en/home.html).

# References
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