env: upgrade nextclade and nextclade dataset for #176

ktmeaton · Oct 24, 2022 · 1e29d7e · 1e29d7e
1 parent 409183f
commit 1e29d7e
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/defaults/parameters.yaml b/defaults/parameters.yaml
@@ -18,8 +18,8 @@ rule_params:
   - name: nextclade_dataset
     dataset: sars-cov-2
     dataset_no-recomb: sars-cov-2-no-recomb
-    tag: "2022-09-27T12:00:00Z"
-    tag_no-recomb: "2022-09-27T12:00:00Z"
+    tag: "2022-10-19T12:00:00Z"
+    tag_no-recomb: "2022-10-19T12:00:00Z"
 
   # ---------------------------------------------------------------------------
   # exclude_clades    : (optional) Exclude strains that are recombinants of these clades

diff --git a/workflow/envs/environment.yaml b/workflow/envs/environment.yaml
@@ -17,7 +17,7 @@ dependencies:
   - bioconda::csvtk=0.24.0
   - bioconda::seqkit=2.2.0
   # Alignmnent and Clade QC
-  - bioconda::nextclade=2.5.0
+  - bioconda::nextclade=2.7.0
   # Phylogeny
   - conda-forge::biopython=1.79
   # Visualization