Update msproteomicstools to 0.8.0 (bioconda#15490)

Package uploads complete: [ci skip]
 - biocontainers/msproteomicstools:0.8.0--py27h3010b51_0
 - linux-64/msproteomicstools-0.8.0-py27h3010b51_0.tar.bz2
 - osx-64/msproteomicstools-0.8.0-py27h917ab60_0.tar.bz2

Co-authored-by: BiocondaBot <[email protected]>
Co-authored-by: Natasha Pavlovikj <[email protected]>
Co-authored-by: Andreas Sjödin <[email protected]>

recipes/msproteomicstools/LICENSE

@@ -0,0 +1,29 @@
+=========================================================================
+         msproteomicstools -- Mass Spectrometry Proteomics Tools
+=========================================================================
+
+Copyright (c) 2013-2015, ETH Zurich
+For a full list of authors, refer to the file AUTHORS.
+
+This software is released under a three-clause BSD license:
+ * Redistributions of source code must retain the above copyright
+   notice, this list of conditions and the following disclaimer.
+ * Redistributions in binary form must reproduce the above copyright
+   notice, this list of conditions and the following disclaimer in the
+   documentation and/or other materials provided with the distribution.
+ * Neither the name of any author or any participating institution
+   may be used to endorse or promote products derived from this software
+   without specific prior written permission.
+--------------------------------------------------------------------------
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
+INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
+EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+

recipes/msproteomicstools/build.sh

@@ -3,7 +3,5 @@
 sed -i.bak 's/xlwt-future/xlwt/g' setup.py
 sed -i.bak 's/cluster == 1.2.2/python-cluster/g' setup.py
 
-cat setup.py
-
-$PYTHON setup.py install 
+$PYTHON setup.py install --single-version-externally-managed --record=record.txt
 

recipes/msproteomicstools/meta.yaml

@@ -1,42 +1,45 @@
+{% set name = "msproteomicstools" %}
+{% set version = "0.8.0" %}
+{% set sha256 = "056be6c6180a316f3b4c9eb9a4c5c486a875473f03c1db5ea6561b86b37b8433" %}
+
 package:
-  name: msproteomicstools
-  version: "0.5.0"
+  name: {{ name|lower }}
+  version: {{ version }}
 
 source:
-  url: https://pypi.python.org/packages/39/2a/c91256aaf64b3bd5f89d1dbd3203a0445d6f2675ad6d16d5b437be9e1a9b/msproteomicstools-0.5.0.tar.gz
-  md5: 9580ef61bd56ef9c12cd1c60dce260c3
-
+  url: https://files.pythonhosted.org/packages/5d/53/ae715b4dec1e9baa087c7a484c33a9b6d619a0b9e7db9c9802a4bc807b6b/{{ name|lower }}-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
 
 build:
-  number: 1
-  skip: True  # [py3k]
+  number: 0
 
 requirements:
+  build:
+    - {{ compiler('c') }}
   host:
-    - python
-    - setuptools
+    - python <3
+    - cython
     - numpy
     - scipy
     - mercurial
     - python-cluster ==1.3.3
     - pyteomics >=2.4.0
     - xlsxwriter >=0.5.3
     - scikits-datasmooth
-    - pymzml ==0.7.5
+    - pymzml ==0.7.8
     - lxml
     - configobj
     - biopython
     - xlwt
-
   run:
-    - python
+    - python <3
     - numpy
     - scipy
     - python-cluster ==1.3.3
     - pyteomics >=2.4.0
     - xlsxwriter >=0.5.3
     - scikits-datasmooth
-    - pymzml ==0.7.5
+    - pymzml ==0.7.8
     - lxml
     - configobj
     - biopython
@@ -58,9 +61,9 @@ test:
     - openswathgui.models
     - openswathgui.views
 
-
 about:
-  home: https://code.google.com/p/msproteomicstools
-  license: BSD License
-  summary: 'Tools for MS-based proteomics'
+  home: https://github.com/msproteomicstools/msproteomicstools
+  license: BSD
   license_family: BSD
+  license_file: '{{ environ["RECIPE_DIR"] }}/LICENSE'
+  summary: "msproteomicstools is a Python library that can be used in LC-MS/MS based proteomics. It features a core library called."