HaplotypeCaller Beta Ploidy Workflow
This release adds a beta workflow for HaplotypeCaller for variable ploidy calling. This workflow is potentially useful for better calling of the sex chromosomes in male samples or samples with known ploidy differences such as trisomy 21.
Alignment Hotfixes
Also in this release are a couple of hotfixes for the alignment workflows. We opened the memory ports for t1k and dedup as we had a cohort that was pushing these tools beyond our default memory allocations. Additionally, we swapped a samtools docker from a personal repo to a public one.
What's Changed
- 🧠 adjust t1k memory by @dmiller15 in #143
- 👨🔬 Beta Workflow to Modify Ploidy by @migbro in #145
- 🧠 memory hook for dedup by @dmiller15 in #144
- 🐳 migrate to public docker by @dmiller15 in #147
Full Changelog: v2.11.0...v2.11.1
Contributors
migbro and dmiller15