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We have changed the internal settings of RawTools so output data files always use decimal dots rather than decimal commas (e.g. 1.234 vs 1,234). Previously decimal commas were sometimes the default depending on the system language. This decision was made because some database search engines are not able to properly parse MGF files with decimal commas. If this impacts your downstream workflow in a negative way, please let us know and we will try to make this change user-specified rather than a default.
Fixed
There was a bug that resulted in crashes during quantification. This was introduced with the reporter mass error reporting. It has been fixed.
MGF files in v1.4 were found to be incompatible with MS-GF+. This has been fixed.