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kdm9 committed Jan 16, 2024
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[![DOI](https://zenodo.org/badge/345496657.svg)](https://zenodo.org/badge/latestdoi/345496657)


A reusable, comprehensive, opinionated plant hologenomics and variant calling
pipeline in Snakemake
A reusable, comprehensive, opinionated Snakemake pipeline for plant-microbe genomics and plant variant calling.

<img src=".github/logo.jpg" width="320">

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# Contribution & Assistance

If you have anything (advice, docs, code) you'd like to contibute, pull requests are more than welcome. Please discuss any major contribution in a new issue before implementing it, to avoid wasted effort.
If you have anything (advice, docs, code) you'd like to contribute, pull requests are more than welcome. Please discuss any major contribution in a new issue before implementing it, to avoid wasted effort.

If you need any assistance, or have other questions or comments, please make an issue on github, or open a discussion. Unfortunately both need an account on github, so alternatively you can email me (`foss <usual email symbol> kdmurray.id.au`).

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