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fix refs

fix refs #251

Workflow file for this run

name: Workflow CI
on:
push:
branches: "main"
pull_request:
branches: [ main ]
workflow_dispatch:
jobs:
run_workflow:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- name: setup-mamba
uses: conda-incubator/setup-miniconda@v3
with:
python-version: 3.11
mamba-version: "*"
channels: bioconda,conda-forge
channel-priority: true
auto-update-conda: true
activate-environment: true
- name: setup data
shell: bash -el {0}
run: |
pushd tests
bash -el setup.sh
popd
- name: run workflow
shell: bash -el {0}
run: |
pushd tests
bash -el test.sh --quick
popd
- name: cat all log files on failure
if: ${{ failure() }}
run: |
find tests/ -name '*.log' -exec tail -n 1000 {} \;