docs: add linux only supported note to paper & readme #238
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name: Workflow CI | |
on: | |
push: | |
branches: "main" | |
pull_request: | |
branches: [ main ] | |
workflow_dispatch: | |
jobs: | |
run_workflow: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v3 | |
- name: setup-mamba | |
uses: conda-incubator/setup-miniconda@v3 | |
with: | |
python-version: 3.11 | |
mamba-version: "*" | |
channels: bioconda,conda-forge | |
channel-priority: true | |
auto-update-conda: true | |
activate-environment: true | |
- name: Cache generated inputs | |
id: cache-inputs | |
uses: actions/cache@v3 | |
with: | |
path: tests/rawdata | |
key: rawdata-${{ hashFiles('tests/Snakefile.generate-rawdata') }}-${{ hashFiles('acanthophis/template/environment.yml') }}-${{ hashFiles('acanthophis/template/workflow/rules/envs/*.yml') }} | |
- name: setup data | |
shell: bash -el {0} | |
run: | | |
mamba info | |
pushd tests | |
bash -el setup.sh | |
popd | |
- name: run workflow | |
shell: bash -el {0} | |
run: | | |
pushd tests | |
bash -el test.sh --quick | |
popd | |
- name: cat all log files on failure | |
if: ${{ failure() }} | |
run: | | |
find tests/ -name '*.log' -exec tail -n 1000 {} \; |