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Jaganathan committed Feb 18, 2019
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Expand Up @@ -19,10 +19,10 @@ SpliceAI requires [tensorflow](https://www.tensorflow.org/install/)>=1.2.0, whic
### Usage
SpliceAI can be run from the command line:
```sh
spliceai -I input.vcf -O output.vcf -R genome.fa -A annotations.txt
spliceai -I input.vcf -O output.vcf -R genome.fa -A grch37

# or you can pipe the input and output VCFs
cat input.vcf | spliceai -R genome.fa -A annotations.txt > output.vcf
cat input.vcf | spliceai -R genome.fa -A grch37 > output.vcf
```

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