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New method for generating plot colors for taxonomic marker overlay. Each taxon is now assigned a weight, based on total coverage x length of the contigs belonging to that taxon, and only the highest-weighted taxa are given a color and included in legend. This prevents legend from being cluttered, and user can adjust the cutoff with markCutoff parameter.
Specific taxa can now be highlighted in plot with highlightTaxon parameter
Bug fix for temporary file generation in SSU extraction and blob annotation scripts.