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ENSEMBL WEBCODE PROJECT SUBCOMPONENTS

The Ensembl Webcode Project includes a number of subcomponents with
separate copyright notices and license terms. Your use of the source
code for the these subcomponents is subject to the terms and
conditions of the following licenses.

COMPONENT: modules/Pack.pm
           modules/ParseMaster.pm

Based on Pack.js and ParseMaster.js by Dean Edwards http://dean.edwards.name/
Ported to Perl by Rob Seiler, ELR Software Pty Ltd http://www.elr.com.au
Copyright 2005. License http://creativecommons.org/licenses/LGPL/2.1/

COMPONENT: utils/static_content/doxygen/bin/doxygenfilter
           htdocs/info/docs/Doxygen/doxygen.css

Both portions of code were based on the following agreement; 
doxygen.css was made by merging multiple css files provided by Doxygen into one, 
then adding some Ensembl-specific requirements.

Doxygen Pre-Processor for Perl
Copyright (C) 2002  Bart Schuller
Copyright (C) 2006  Phinex Informatik AG
All Rights Reserved

Doxygen Filter is free software; you can redistribute it and/or modify
it under the same terms as Perl itself.

Larry Wall's 'Artistic License' for perl can be found in
http://www.perl.com/pub/a/language/misc/Artistic.html

COMPONENT: modules/CSS/Minifier.pm
           modules/JavaScript/Minifier.pm

Copyright (C) 2007 by Peter Michaux

This library is free software; you can redistribute it and/or modify
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COMPONENT: modules/Bio/Das/Lite.pm

Copyright (C) 2007 GRL, by Roger Pettett

This library is free software; you can redistribute it and/or modify
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at your option, any later version of Perl 5 you may have available.

COMPONENT: htdocs/components/00_Base.js
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           htdocs/components/00_jquery_hoverintent.js
           htdocs/raphael/
           
These libraries are all provided under the MIT license http://opensource.org/licenses/MIT
           
Base.js            Copyright 2006-2007, Dean Edwards
jQuery             Copyright 2005, 2012 jQuery Foundation, Inc.
jQuery UI          Copyright 2013 jQuery Foundation and other contributors
jQuery hoverIntent Copyright 2007, 2013 Brian Cherne
Rapha?l JS         Copyright 2010 Dmitry Baranovskiy

COMPONENT: htdocs/components/00_jquery_hashchange.js

This code has been modified slightly to work with jQuery 1.9 

Copyright (c) 2010 "Cowboy" Ben Alman
Dual licensed under the MIT and GPL licenses.
http://benalman.com/about/license/

COMPONENT: htdocs/components/00_jquery_dataTables.js

Copyright 2008-2012 Allan Jardine, all rights reserved.

This source file is free software, under either the GPL v2 license or a
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  http://datatables.net/license_bsd

This source file is distributed in the hope that it will be useful, but 
WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY 
or FITNESS FOR A PARTICULAR PURPOSE. See the license files for details.

COMPONENT: htdocs/info/docs/api/compara/highlight.css

Generated by highlight 3.9, http://www.andre-simon.de/

GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007

Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/>
Everyone is permitted to copy and distribute verbatim copies
of this license document, but changing it is not allowed.

COMPONENT: htdocs/jalview/

The Jalview source is made available under the GNU General Public License (v3) as a gzipped tar file, which expands to a directory named jalview.

COMPONENT: utils/compression/compiler.jar

The Google Closure Compiler is distributed under Apache License 2.0 (http://www.apache.org/licenses/LICENSE-2.0)

COMPONENT: utils/compression/yuicompressor-2.4.7.jar

All code specific to YUI Compressor is issued under a BSD license (http://yui.github.io/yui/license.html). 
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Rhino is issued under the Mozilla Public License (MPL) (http://www.mozilla.org/MPL/), and MPL applies to the Rhino source and binaries that are distributed with YUI Compressor, 
including Rhino modifications made by YUI Compressor. 
YUI Compressor also makes use of and distributes a binary of JArgs (http://jargs.sourceforge.net/); the JArgs BSD license applies to this binary.

COMPONENT: utils/spider/spider.pl

Copyright (C) 2001-2003 Bill Moseley [email protected]

This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; either version
2 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

COMPONENT: utils/edoc/support/scriptaculous.js
           utils/edoc/support/controls.js
           utils/edoc/support/dragdrop.js
           utils/edoc/support/slider.js
           utils/edoc/support/unittest.js

These libraries are all under the same license, with different copyrights, listed below:

utils/edoc/support/controls.js
Copyright (c) 2005 Thomas Fuchs (http://script.aculo.us, http://mir.aculo.us)
          (c) 2005 Ivan Krstic (http://blogs.law.harvard.edu/ivan)
          (c) 2005 Jon Tirsen (http://www.tirsen.com)
          
          
utils/edoc/support/dragdrop.js
Copyright (c) 2005 Thomas Fuchs (http://script.aculo.us, http://mir.aculo.us)
          (c) 2005 Sammi Williams (http://www.oriontransfer.co.nz, [email protected])

utils/edoc/support/slider.js
Copyright (c) 2005 Marty Haught, Thomas Fuchs           
           
utils/edoc/support/unittest.js
(c) 2005 Jon Tirsen (http://www.tirsen.com)
(c) 2005 Michael Schuerig (http://www.schuerig.de/michael/)

Copyright (c) 2005 Thomas Fuchs (http://script.aculo.us, http://mir.aculo.us)

Permission is hereby granted, free of charge, to any person obtaining
a copy of this software and associated documentation files (the
"Software"), to deal in the Software without restriction, including
without limitation the rights to use, copy, modify, merge, publish,
distribute, sublicense, and/or sell copies of the Software, and to
permit persons to whom the Software is furnished to do so, subject to
the following conditions:

The above copyright notice and this permission notice shall be
included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

COMPONENT: utils/edoc/support/prototype.js

(c) 2005 Sam Stephenson <[email protected]>

Prototype is freely distributable under the terms of an MIT-style license.
For details, see the Prototype web site: http://prototype.conio.net/