Hot fix for normalization with batches

jvivian · Jun 10, 2024 · d5d3816 · d5d3816
1 parent 49159d3
commit d5d3816
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/covid19_drdfm/streamlit/pages/1_Factor_Analysis.py b/covid19_drdfm/streamlit/pages/1_Factor_Analysis.py
@@ -75,7 +75,7 @@ def normalize(df):
 ad = ann.read_h5ad(res_dir / "data.h5ad")
 new = ad.to_df().reset_index()
 new["State"] = ad.obs["State"].to_list()
-new = normalize(new)
+new = normalize(new[new.State == state])
 
 # Normalize factors and add to new dataframe
 if st.sidebar.checkbox("Invert Factor"):