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[ci skip] Merge PR 19770
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Merge PR bioconda#19770, commits were: 
 * Update meta.yaml
 * Merge branch 'chira' of github.com:pavanvidem/bioconda-recipes into chira
 * Recipes for CLAN and oligoarrayaux
 * Update meta.yaml
 * Update meta.yaml
 * Recipes for CLAN and oligoarrayaux
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pavanvidem authored and jvanheld committed Jan 21, 2020
1 parent 372fce6 commit f2b32dc
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7 changes: 7 additions & 0 deletions recipes/clan/build.sh
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sed -i.bak "s/CPP=g++/CPP=\${GXX}/" src/Makefile
sed -i.bak "s/-o clan_search/-o clan_search -lrt/" src/Makefile
sed -i.bak "s/-o clan_annotate/-o clan_annotate -lrt/" src/Makefile
make
mkdir -p $PREFIX/bin
cp bin/* $PREFIX/bin/

29 changes: 29 additions & 0 deletions recipes/clan/meta.yaml
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package:
name: clan
version: 0.05

source:
url: https://sourceforge.net/projects/clan-mapping/files/CLAN_v0.05-x86_64.tar.gz
sha256: 302b4734522115daa73665275b514f2290f7efd3d752b94a77cb9254abe3c987

build:
number: 0
skip: True # [osx]

requirements:
build:
- {{ compiler('cxx') }}

test:
commands:
- clan_index -h 2>&1 | grep usage
- clan_search -h 2>&1 | grep usage

about:
home: https://sourceforge.net/projects/clan-mapping/
license: Creative Commons BY-NC-ND 4.0 license
summary: CLAN - the CrossLinked reads ANalysis tool

extra:
identifiers:
- doi:10.1016/j.isci.2019.05.038
3 changes: 3 additions & 0 deletions recipes/oligoarrayaux/build.sh
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./configure --prefix=$PREFIX
make
make install
32 changes: 32 additions & 0 deletions recipes/oligoarrayaux/meta.yaml
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package:
name: oligoarrayaux
version: 3.8

source:
url: http://unafold.rna.albany.edu/cgi-bin/OligoArrayAux-download.cgi?oligoarrayaux-3.8.tar.gz
sha256: 3dadc2dbfc5fd95d75a0c8eee3ed2cdde0ddd1b4c352d99eb297945cf3145066

build:
number: 0

requirements:
build:
- {{ compiler('cxx') }}
host:
- gawk
- grep
- perl >=5.6.1

test:
commands:
- hybrid-min -h 2>&1 | grep Usage

about:
home: http://unafold.rna.albany.edu/?q=DINAMelt/OligoArrayAux
license: ACADEMIC NON-COMMERCIAL USE LICENSE
license_file: LICENSE
summary: OligoArrayAux is a subset of the UNAFold package for use with OligoArray.

extra:
identifiers:
- doi:10.1007/978-1-60327-429-6_1

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