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Mini-app investigating performance of many small dgemm operations.
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justinlietz/small_dgemms
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TL;DR: This is a mini-app currently under development which is investigating strategies for computing many (~100k) small matrix-matrix multiplication operations in a massively parallel framework. Short term problem: Many quantum many-body physics codes rely on massively parallel tensor contractions. To get performance, a typical strategy is to permute the tensors so that they can be re-written as matrix-matrix multiplication. These matrices are extremely sparse with a known pattern dictated by the physical symmetries of the target problem. By exploiting these symmetries, a large sparse matrix can be stored as a block diagonal matrix with ~100k blocks of a wide range of sizes (from 1 element to a trillion). Handling of the large matrices is ok, but the performance of computing thousands of small gemms is very poor right now. Looping over thousands of small cublas calls causes performance to be bogged down in overhead. Currently looping over host side openblas gemm calls is faster. This mini-app is investigating any solutions that might improve the performance of computing many small gemms on GPUs. Currently the only other test implemented is using the magma library magma_dgemm_vbatched call, which seems to have very good performance, but breaks (gives 0 for A*B) for large (>2^15 or so) numbers of matrices in the batch. Medium term problem: A library call which computes the full tensor contraction would be ideal long term. It is common to see terms in many-body theory which might look like (using Einstein summation notation) T^{ab}_{ij} = alpha * V^{ab}_{cd} * T^{cd}_{ij} + beta * T^{ab}_{ij} where in general, alpha and beta are complex numbers (where single precision is typically insufficient) as are the entries of the rank 4 (or higher) tensors A, B, and C. Each of these tensor indices can represent thousands or tens of thousands of states, so naively storing these objects as 4-indexed arrays T[a][b][i][j] woudl require about (10,000)^4 *(16 bytes) = 160 Pb of memory each. However, the sparse structure can be exploited by creating a new 2-(or higher) body basis. By chosing the 2-body basis (a,b) -> A in a way that maps onto physical symmetries, we can rewrite the tensors as a block diagonal structure T[a][b][i][j] -> T'[block][A][I] where by storing only this large array of matrices on the diagonal, we can reduce the memory requirements by a factor of ~10,000 making these calculations feasible with distributed memory schemes. This means that the tensor contraction expressed above would now be computed as for iBlock in Blocks T[iBlock]^{A}_{I} = alpha*V[iBlock]^{A}_{C} * T[iBlock]^{C}_{I} + beta*T[iBlock]^{A}_{I} which is a large loop over gemm operations. Since the tensor contractions over the 1-body basis indices (c,d) are mapped nicely to a tensor contraction (matmult) over the 2-body basis index (C). Long term problem: There are many terms which needs tensor permutations along with gemm operations, but we are just looking at the gemm portion of the kernel in this mini-app for now.
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