ADd incompatibility check to test for adios2 and numpy (#142) #308
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| name: Test package with redhat | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| workflow_call: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: "0 8 * * *" | |
| jobs: | |
| create-datasets: | |
| uses: ./.github/workflows/create_legacy_data.yml | |
| with: | |
| artifact_name: "legacy_ompi" | |
| create-legacy-datasets: | |
| uses: ./.github/workflows/create_legacy_checkpoint.yml | |
| with: | |
| artifact_name: "legacy_checkpoint_ompi" | |
| test-code: | |
| runs-on: "ubuntu-22.04" | |
| needs: [create-datasets, create-legacy-datasets] | |
| container: docker.io/fenicsproject/test-env:current-redhat | |
| env: | |
| DEB_PYTHON_INSTALL_LAYOUT: deb_system | |
| PETSC_ARCH: "" | |
| PETSC_DIR: "/usr/local/" | |
| PYTHONPATH: "/usr/local/lib/:${PYTHONPATH}" | |
| working-directory: ./src | |
| strategy: | |
| matrix: | |
| adios2: ["v2.10.2"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Get pip flags based on version | |
| id: python-version | |
| shell: bash -el {0} | |
| run: | | |
| MODERN_PIP=$(python3 -c "import sys; t = sys.version_info >= (3, 11, 0); sys.stdout.write(str(t))") | |
| if [ ${MODERN_PIP} == "True" ]; then | |
| FLAGS="--break-system-packages" | |
| else | |
| FLAGS="" | |
| python3 -m pip install --upgrade pip | |
| fi | |
| echo "PYTHON_FLAGS=${FLAGS}" >> "$GITHUB_OUTPUT" | |
| - name: Update pip | |
| run: python3 -m pip install ${{ steps.python-version.outputs.PYTHON_FLAGS}} --upgrade pip setuptools | |
| - name: Install DOLFINx | |
| uses: jorgensd/actions/[email protected] | |
| with: | |
| adios2: ${{ matrix.adios2 }} | |
| petsc_arch: ${{ env.PETSC_ARCH }} | |
| petsc_dir: ${{ env.PETSC_DIR }} | |
| dolfinx: main | |
| basix: main | |
| ufl: main | |
| ffcx: main | |
| working-directory: ${{ env.working-directory}} | |
| - name: Download legacy data | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: legacy_ompi | |
| path: ./legacy | |
| - name: Download legacy data | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: legacy_checkpoint_ompi | |
| path: ./legacy_checkpoint | |
| - name: Install package | |
| run: python3 -m pip install ${{ steps.python-version.outputs.PYTHON_FLAGS}} --check-build-dependencies .[test] | |
| - name: Run tests | |
| run: | | |
| coverage run --rcfile=.coveragerc -m mpi4py -m pytest -xvs ./tests | |
| - name: Run tests in parallel | |
| run: | | |
| mpirun -n 4 coverage run --rcfile=.coveragerc -m mpi4py -m pytest -xvs ./tests |