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Fix path id issue when using bidirectional gbwt #2

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merged 1 commit into from
May 12, 2020
Merged

Fix path id issue when using bidirectional gbwt #2

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7 changes: 6 additions & 1 deletion src/paths_index.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -99,7 +99,12 @@ string PathsIndex::pathName(const uint32_t path_id) const {
return sstream.str();
}

uint32_t PathsIndex::pathLength(const uint32_t path_id) const {
uint32_t PathsIndex::pathLength(uint32_t path_id) const {

if (index_.bidirectional()) {

path_id = gbwt::Path::encode(path_id, false);
}

uint32_t path_length = 0;

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2 changes: 1 addition & 1 deletion src/paths_index.hpp
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Expand Up @@ -26,7 +26,7 @@ class PathsIndex {
uint32_t nodeLength(const uint32_t node_id) const;

string pathName(const uint32_t path_id) const;
uint32_t pathLength(const uint32_t path_id) const;
uint32_t pathLength(uint32_t path_id) const;
double effectivePathLength(const uint32_t path_id, const FragmentLengthDist & fragment_length_dist) const;

private:
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