fasta qc regions gene fix

jodyphelan · Oct 31, 2024 · 5c86133 · 5c86133
1 parent 0e11419
commit 5c86133
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/pathogenprofiler/fasta.py b/pathogenprofiler/fasta.py
@@ -112,8 +112,8 @@ def get_target_qc(self,bed_file: str) -> List[TargetQC]:
             row = l.strip().split()
             results.append(
                 TargetQC(
-                    target = row[3],
-                    percent_depth_pass=float(row[9]),
+                    target = row[4],
+                    percent_depth_pass=float(row[9])*100,
                     median_depth=int(float(row[9])),
                 )
             )