Built site for gh-pages

jhylin · Oct 12, 2024 · f7b4fd0 · f7b4fd0
1 parent 18a1190
commit f7b4fd0
Show file tree

Hide file tree

Showing 11 changed files with 6,544 additions and 3,067 deletions.
diff --git a/.nojekyll b/.nojekyll
@@ -1 +1 @@
-3a0bac18
+a285c703
diff --git a/index-python.xml b/index-python.xml
diff --git a/index.html b/index.html
diff --git a/index.xml b/index.xml
diff --git a/listings.json b/listings.json
@@ -17,8 +17,6 @@
       "/posts/13_Shiny_app_python/ShinyAppPy_PC_Cov19_app_embed.html",
       "/posts/13_Shiny_app_python/ShinyAppPy_PC_Cov19_data_prep.html",
       "/posts/12_Shiny_app_chembl/ShinyAppChembl.html",
-      "/posts/11_ML1-3_Small_molecules_in_ChEMBL_database/ML1-3_chembl_cpds.html",
-      "/posts/10_ML1-2_Small_molecules_in_ChEMBL_database/ML1-2_chembl_cpds.html",
       "/posts/09_Pills/Rust_evcxr_polars_plotly_final.html",
       "/posts/09_Pills/Rust_polars_pills_df.html",
       "/posts/09_Pills/Rust_polars_pills_ws.html",

diff --git a/posts/10_ML1-2_Small_molecules_in_ChEMBL_database/ML1-2_chembl_cpds.html b/posts/10_ML1-2_Small_molecules_in_ChEMBL_database/ML1-2_chembl_cpds.html
diff --git a/posts/11_ML1-3_Small_molecules_in_ChEMBL_database/ML1-3_chembl_cpds.html b/posts/11_ML1-3_Small_molecules_in_ChEMBL_database/ML1-3_chembl_cpds.html
diff --git a/...les_in_ChEMBL_database/ML1-3_chembl_cpds_files/figure-html/cell-18-output-2.png b/...les_in_ChEMBL_database/ML1-3_chembl_cpds_files/figure-html/cell-18-output-2.png
diff --git a/posts/18_Notes_molstar_quarto/Molstar_quarto.html b/posts/18_Notes_molstar_quarto/Molstar_quarto.html
@@ -228,7 +228,7 @@ <h5 class="anchored" data-anchor-id="an-example-using-molstar-with-rcsb-pdb"><st
 <p><code>{{&lt; mol-rcsb 4mqt &gt;}}</code></p>
     <div id="app-4mqt" class="molstar-app"></div>
     <script type="text/javascript">
-    molstar.Viewer.create("app-4mqt", {"viewportShowExpand":true,"layoutShowLeftPanel":true,"layoutShowLog":false,"emdbProvider":"rcsb","pdbProvider":"rcsb","layoutIsExpanded":false,"viewportShowSelectionMode":false,"layoutShowControls":false,"layoutShowRemoteState":false,"layoutShowSequence":false,"viewportShowAnimation":true}).then(viewer => {
+    molstar.Viewer.create("app-4mqt", {"layoutShowRemoteState":false,"layoutShowLeftPanel":true,"viewportShowSelectionMode":false,"layoutShowSequence":false,"emdbProvider":"rcsb","layoutShowControls":false,"layoutIsExpanded":false,"viewportShowExpand":true,"pdbProvider":"rcsb","viewportShowAnimation":true,"layoutShowLog":false}).then(viewer => {
     viewer.loadPdb("4mqt");    });
     </script>
 

diff --git a/search.json b/search.json
diff --git a/sitemap.xml b/sitemap.xml
@@ -1,167 +1,159 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9">
-  <url>
-    <loc>https://jhylin.github.io/Data_in_life_blog/posts/10_ML1-2_Small_molecules_in_ChEMBL_database/ML1-2_chembl_cpds.html</loc>
-    <lastmod>2024-09-04T23:05:26.226Z</lastmod>
-  </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/Blog-Portfolio_projects/Portfolio_projects.html</loc>
-    <lastmod>2024-09-04T23:05:27.300Z</lastmod>
+    <lastmod>2024-10-12T23:07:29.019Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/03_Long_COVID_data_in_SQL/Long_COVID_SQL.html</loc>
-    <lastmod>2024-09-04T23:05:28.367Z</lastmod>
+    <lastmod>2024-10-12T23:07:30.065Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/PhD_projects/PhD_projects.html</loc>
-    <lastmod>2024-09-04T23:05:29.658Z</lastmod>
+    <lastmod>2024-10-12T23:07:31.234Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/15_Molviz/Molviz.html</loc>
-    <lastmod>2024-09-04T23:05:31.396Z</lastmod>
+    <lastmod>2024-10-12T23:07:32.767Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/15_Molviz/itables.html</loc>
-    <lastmod>2024-09-04T23:05:32.975Z</lastmod>
+    <lastmod>2024-10-12T23:07:34.322Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/02_Long_COVID_dashboard/Tableau_dashboard.html</loc>
-    <lastmod>2024-09-04T23:05:33.990Z</lastmod>
+    <lastmod>2024-10-12T23:07:35.345Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/Blog-Data_analytics/Focussing_on_data_analytics.html</loc>
-    <lastmod>2024-09-04T23:05:35.076Z</lastmod>
+    <lastmod>2024-10-12T23:07:36.436Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/Blog-Social_network/Embracing_social_network.html</loc>
-    <lastmod>2024-09-04T23:05:36.167Z</lastmod>
+    <lastmod>2024-10-12T23:07:37.548Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/13_Shiny_app_python/ShinyAppPy_PC_Cov19_app_embed.html</loc>
-    <lastmod>2024-09-04T23:05:38.457Z</lastmod>
+    <lastmod>2024-10-12T23:07:39.907Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/13_Shiny_app_python/ShinyAppPy_PC_Cov19_app_embed_pyodide_http.html</loc>
-    <lastmod>2024-09-04T23:05:40.403Z</lastmod>
+    <lastmod>2024-10-12T23:07:41.858Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/13_Shiny_app_python/ShinyAppPy_PC_Cov19_data_prep.html</loc>
-    <lastmod>2024-09-04T23:05:43.610Z</lastmod>
+    <lastmod>2024-10-12T23:07:45.107Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/05_Phenotypes_associated_with_rare_diseases/Phenotypes_rare_diseases.html</loc>
-    <lastmod>2024-09-04T23:05:45.188Z</lastmod>
+    <lastmod>2024-10-12T23:07:46.795Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/18_Notes_molstar_quarto/Molstar_quarto.html</loc>
-    <lastmod>2024-09-04T23:05:47.287Z</lastmod>
+    <lastmod>2024-10-12T23:07:49.026Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/SERCA_project/SERCA_project.html</loc>
-    <lastmod>2024-09-04T23:05:49.239Z</lastmod>
+    <lastmod>2024-10-12T23:07:50.857Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/Publications/Side_projects.html</loc>
-    <lastmod>2024-09-04T23:05:49.627Z</lastmod>
+    <lastmod>2024-10-12T23:07:51.197Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/01_Drugs_in_rare_diseases/Rare_diseases_drugs.html</loc>
-    <lastmod>2024-09-04T23:05:50.728Z</lastmod>
+    <lastmod>2024-10-12T23:07:52.387Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/Blog-DS_journey/Beginning_of_DS_journey.html</loc>
-    <lastmod>2024-09-04T23:05:51.844Z</lastmod>
+    <lastmod>2024-10-12T23:07:53.547Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/Blog-Blog_move/Blog_move.html</loc>
-    <lastmod>2024-09-04T23:05:52.998Z</lastmod>
+    <lastmod>2024-10-12T23:07:54.597Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/09_Pills/Rust_evcxr_polars_plotly_final.html</loc>
-    <lastmod>2024-09-04T23:05:54.507Z</lastmod>
+    <lastmod>2024-10-12T23:07:56.065Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/09_Pills/Rust_polars_pills_df.html</loc>
-    <lastmod>2024-09-04T23:05:56.927Z</lastmod>
+    <lastmod>2024-10-12T23:07:58.552Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/09_Pills/Rust_polars_pills_ws.html</loc>
-    <lastmod>2024-09-04T23:06:00.567Z</lastmod>
+    <lastmod>2024-10-12T23:08:02.108Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/Blog-Update/Update_on_portfolio.html</loc>
-    <lastmod>2024-09-04T23:06:01.726Z</lastmod>
+    <lastmod>2024-10-12T23:08:03.283Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/20_Cyp3a4_2d6_inh/1_CYP450_drugs.html</loc>
-    <lastmod>2024-09-04T23:06:05.775Z</lastmod>
+    <lastmod>2024-10-12T23:08:07.358Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/07_Molecular_similarities_in_COVID-19_antivirals/Mol_sim_covid.html</loc>
-    <lastmod>2024-09-04T23:06:08.394Z</lastmod>
+    <lastmod>2024-10-12T23:08:09.779Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/04_Natural_history_of_rare_diseases_–_malformation_syndrome/Natural_history_rare_diseases_mal_syn.html</loc>
-    <lastmod>2024-09-04T23:06:09.534Z</lastmod>
+    <lastmod>2024-10-12T23:08:10.896Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/19_ML2-3_Boosted_trees/1_adaboost_xgb.html</loc>
-    <lastmod>2024-09-04T23:06:12.020Z</lastmod>
+    <lastmod>2024-10-12T23:08:13.468Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/06_Long_COVID_update/ExtractTableFromPDF.html</loc>
-    <lastmod>2024-09-04T23:06:13.407Z</lastmod>
+    <lastmod>2024-10-12T23:08:14.786Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/06_Long_COVID_update/Long_COVID_update.html</loc>
-    <lastmod>2024-09-04T23:06:15.093Z</lastmod>
+    <lastmod>2024-10-12T23:08:16.437Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/14_Scaffolds_in_small_molecules/chembl_anti-inf_data_prep_current.html</loc>
-    <lastmod>2024-09-04T23:06:19.289Z</lastmod>
+    <lastmod>2024-10-12T23:08:20.616Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/16_ML2-1_Decision_tree/1_data_col_prep.html</loc>
-    <lastmod>2024-09-04T23:06:21.250Z</lastmod>
+    <lastmod>2024-10-12T23:08:22.562Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/16_ML2-1_Decision_tree/2_data_prep_tran.html</loc>
-    <lastmod>2024-09-04T23:06:23.290Z</lastmod>
+    <lastmod>2024-10-12T23:08:24.632Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/16_ML2-1_Decision_tree/3_model_build.html</loc>
-    <lastmod>2024-09-04T23:06:25.122Z</lastmod>
+    <lastmod>2024-10-12T23:08:26.681Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/08_ML1-1_Small_molecules_in_ChEMBL_database/ML1-1_chembl_cpds.html</loc>
-    <lastmod>2024-09-04T23:06:27.061Z</lastmod>
+    <lastmod>2024-10-12T23:08:28.722Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/17_ML2-2_Random_forest/2_random_forest_classifier.html</loc>
-    <lastmod>2024-09-04T23:06:29.312Z</lastmod>
+    <lastmod>2024-10-12T23:08:31.057Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/17_ML2-2_Random_forest/1_random_forest.html</loc>
-    <lastmod>2024-09-04T23:06:31.714Z</lastmod>
+    <lastmod>2024-10-12T23:08:33.316Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/posts/12_Shiny_app_chembl/ShinyAppChembl.html</loc>
-    <lastmod>2024-09-04T23:06:32.845Z</lastmod>
-  </url>
-  <url>
-    <loc>https://jhylin.github.io/Data_in_life_blog/posts/11_ML1-3_Small_molecules_in_ChEMBL_database/ML1-3_chembl_cpds.html</loc>
-    <lastmod>2024-09-04T23:06:34.377Z</lastmod>
+    <lastmod>2024-10-12T23:08:34.453Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/ShinyAppChembl/Chembl_intro.html</loc>
-    <lastmod>2024-09-04T23:06:35.541Z</lastmod>
+    <lastmod>2024-10-12T23:08:37.179Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/index.html</loc>
-    <lastmod>2024-09-04T23:06:36.363Z</lastmod>
+    <lastmod>2024-10-12T23:08:37.994Z</lastmod>
   </url>
   <url>
     <loc>https://jhylin.github.io/Data_in_life_blog/about.html</loc>
-    <lastmod>2024-09-04T23:06:36.743Z</lastmod>
+    <lastmod>2024-10-12T23:08:38.337Z</lastmod>
   </url>
 </urlset>