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Hi Jeff,
Thanks very much for keeping cropgui going. I've a few updates here which might be of interest:
I have another patch which offers correct crop rounding, but am not sure whether it's worth pushing. The current always-round-to-block-size behaviour for all four edges is overly aggressive, in that the bottom and right edges of any crop don't need to be block-aligned, but unfortunately jpegtran itself doesn't handle this correctly for rotated images even if provided with a valid command line. I'm looking into trying to produce a patch for that..