Analysing High-throughput Sequencing Data in Immuno oncology.

We are Group25 from the Autumn 2023 R for Bio-Datas Science class at DTU. This is the repository for our course project, focused on analysing high throughput sequencing data relevant to immuno oncology.

The aim of our projects...

Our data source is...

Project Authors: Andreas Høyer Kongsgaard s154146 (PhD Student)
Darya Trubach s221047/dartru (PhD Student)
Emilie Sofie Engdal s194360 (MSc. Bioinformatics and Systems Biology)
Manon Kirstine Chevalier s215112 (MSc. Bioinformatics and Systems Biology)
Jennifer Fortuny I Zhan s230705 (MSc. Bioinformatics and Systems Biology)

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Analysing High-throughput Sequencing Data in Immuno oncology.

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Name		Name	Last commit message	Last commit date
Latest commit History 10 Commits
2023-09-18_Samples_overview.csv		2023-09-18_Samples_overview.csv
2023-09-18_fold_change_by_MHC_v200803_1532.csv		2023-09-18_fold_change_by_MHC_v200803_1532.csv
AP0101_fold_change_by_MHC_v201211_2352.xlsx		AP0101_fold_change_by_MHC_v201211_2352.xlsx
AP0201_KIR_fold_change_by_MHC_v200803_1528.xlsx		AP0201_KIR_fold_change_by_MHC_v200803_1528.xlsx
AP0301_KIR_DP_fold_change_by_MHC_v200803_1529.xlsx		AP0301_KIR_DP_fold_change_by_MHC_v200803_1529.xlsx
AP0301_KIR_fold_change_by_MHC_v200803_1524.xlsx		AP0301_KIR_fold_change_by_MHC_v200803_1524.xlsx
AP0401_KIR_fold_change_by_MHC_v200803_1531.xlsx		AP0401_KIR_fold_change_by_MHC_v200803_1531.xlsx
AP0501_KIR_fold_change_by_MHC_v200803_1532.xlsx		AP0501_KIR_fold_change_by_MHC_v200803_1532.xlsx
AP0501_fold_change_by_MHC_v200803_1532.xlsx		AP0501_fold_change_by_MHC_v200803_1532.xlsx
AP0601_fold_change_by_MHC_v200803_1535.xlsx		AP0601_fold_change_by_MHC_v200803_1535.xlsx
AP0701_fold_change_by_MHC_v200803_1525.xlsx		AP0701_fold_change_by_MHC_v200803_1525.xlsx
AP0801_KIR_DP_fold_change_by_MHC_v200803_1537.xlsx		AP0801_KIR_DP_fold_change_by_MHC_v200803_1537.xlsx
AP0801_KIR_fold_change_by_MHC_v200803_1536.xlsx		AP0801_KIR_fold_change_by_MHC_v200803_1536.xlsx
AP1001_KIR_DP_fold_change_by_MHC_v200803_1539.xlsx		AP1001_KIR_DP_fold_change_by_MHC_v200803_1539.xlsx
AP1001_KIR_fold_change_by_MHC_v200803_1538.xlsx		AP1001_KIR_fold_change_by_MHC_v200803_1538.xlsx
AP1201_fold_change_by_MHC_v200803_1539.xlsx		AP1201_fold_change_by_MHC_v200803_1539.xlsx
AP1401_KIR_fold_change_by_MHC_v200803_1541.xlsx		AP1401_KIR_fold_change_by_MHC_v200803_1541.xlsx
AP1401_fold_change_by_MHC_v210817_1558.xlsx		AP1401_fold_change_by_MHC_v210817_1558.xlsx
AP1501_fold_change_by_MHC_v200803_1542.xlsx		AP1501_fold_change_by_MHC_v200803_1542.xlsx
AP1601_KIR_DP_fold_change_by_MHC_v200803_1545.xlsx		AP1601_KIR_DP_fold_change_by_MHC_v200803_1545.xlsx
AP1801_KIR_fold_change_by_MHC_v200803_1551.xlsx		AP1801_KIR_fold_change_by_MHC_v200803_1551.xlsx
AP2001_fold_change_by_MHC_v200803_1552.xlsx		AP2001_fold_change_by_MHC_v200803_1552.xlsx
AP2301_KIR_fold_change_by_MHC_v201211_2353.xlsx		AP2301_KIR_fold_change_by_MHC_v201211_2353.xlsx
AP2301_KIR_fold_change_by_MHC_v201212_0006.xlsx		AP2301_KIR_fold_change_by_MHC_v201212_0006.xlsx
AP2701_fold_change_by_MHC_v201211_2354.xlsx		AP2701_fold_change_by_MHC_v201211_2354.xlsx
AP2801_fold_change_by_MHC_v210816_2107.xlsx		AP2801_fold_change_by_MHC_v210816_2107.xlsx
AP2901_fold_change_by_MHC_v210816_2109.xlsx		AP2901_fold_change_by_MHC_v210816_2109.xlsx
AP3001_KIR_DP_fold_change_by_MHC_v201212_0007.xlsx		AP3001_KIR_DP_fold_change_by_MHC_v201212_0007.xlsx
AP3001_KIR_fold_change_by_MHC_v201211_2354.xlsx		AP3001_KIR_fold_change_by_MHC_v201211_2354.xlsx
AP3501_fold_change_by_MHC_v201211_2355.xlsx		AP3501_fold_change_by_MHC_v201211_2355.xlsx
AP3701_fold_change_by_MHC_v201212_0000.xlsx		AP3701_fold_change_by_MHC_v201212_0000.xlsx
AP4101_fold_change_by_MHC_v201212_0001.xlsx		AP4101_fold_change_by_MHC_v201212_0001.xlsx
AP4301_fold_change_by_MHC_v210817_1633.xlsx		AP4301_fold_change_by_MHC_v210817_1633.xlsx
AP4401_fold_change_by_MHC_v201212_0003.xlsx		AP4401_fold_change_by_MHC_v201212_0003.xlsx
AP4801_KIR_fold_change_by_MHC_v201212_0004.xlsx		AP4801_KIR_fold_change_by_MHC_v201212_0004.xlsx
AP5201_fold_change_by_MHC.xlsx		AP5201_fold_change_by_MHC.xlsx
AP5301_fold_change_by_MHC.xlsx		AP5301_fold_change_by_MHC.xlsx
AP5401_KIR_DP_fold_change_by_MHC_v201212_0004.xlsx		AP5401_KIR_DP_fold_change_by_MHC_v201212_0004.xlsx
AP5401_fold_change_by_MHC_v201212_0009.xlsx		AP5401_fold_change_by_MHC_v201212_0009.xlsx
AP5501_fold_change_by_MHC_v210817_1636.xlsx		AP5501_fold_change_by_MHC_v210817_1636.xlsx
AP5601_fold_change_by_MHC_v201212_0010.xlsx		AP5601_fold_change_by_MHC_v201212_0010.xlsx
AP5901_fold_change_by_MHC_v210817_1638.xlsx		AP5901_fold_change_by_MHC_v210817_1638.xlsx
AP6501_KIR_fold_change_by_MHC_v201212_0010.xlsx		AP6501_KIR_fold_change_by_MHC_v201212_0010.xlsx
AP6901_fold_change_by_MHC_v210817_1639.xlsx		AP6901_fold_change_by_MHC_v210817_1639.xlsx
AP7001_fold_change_by_MHC_v210817_1639.xlsx		AP7001_fold_change_by_MHC_v210817_1639.xlsx
AP7501_fold_change_by_MHC_v210816_2113.xlsx		AP7501_fold_change_by_MHC_v210816_2113.xlsx
AP_master_file.xlsx		AP_master_file.xlsx
BC100_KIR_fold_change_by_MHC_v200805_0040.xlsx		BC100_KIR_fold_change_by_MHC_v200805_0040.xlsx
BC103_KIR_fold_change_by_MHC_v200805_0041.xlsx		BC103_KIR_fold_change_by_MHC_v200805_0041.xlsx
BC10_KIR_DP_fold_change_by_MHC_v200805_0022.xlsx		BC10_KIR_DP_fold_change_by_MHC_v200805_0022.xlsx
BC10_KIR_fold_change_by_MHC_v200805_0021.xlsx		BC10_KIR_fold_change_by_MHC_v200805_0021.xlsx
BC120_KIR_fold_change_by_MHC_v200805_0042.xlsx		BC120_KIR_fold_change_by_MHC_v200805_0042.xlsx
BC13_fold_change_by_MHC_v200805_0023.xlsx		BC13_fold_change_by_MHC_v200805_0023.xlsx
BC317_KIR_DP_fold_change_by_MHC_v201212_0011.xlsx		BC317_KIR_DP_fold_change_by_MHC_v201212_0011.xlsx
BC317_KIR_fold_change_by_MHC_v201211_2351.xlsx		BC317_KIR_fold_change_by_MHC_v201211_2351.xlsx
BC329_KIR_DP_fold_change_by_MHC_v200805_0042.xlsx		BC329_KIR_DP_fold_change_by_MHC_v200805_0042.xlsx
BC329_KIR_fold_change_by_MHC_v200805_0042.xlsx		BC329_KIR_fold_change_by_MHC_v200805_0042.xlsx
BC330_KIR_C0401_fold_change_by_MHC_v200803_1526.xlsx		BC330_KIR_C0401_fold_change_by_MHC_v200803_1526.xlsx
BC330_KIR_DP_fold_change_by_MHC_v201211_2349.xlsx		BC330_KIR_DP_fold_change_by_MHC_v201211_2349.xlsx
BC330_KIR_DP_fold_change_by_MHC_v201212_0012.xlsx		BC330_KIR_DP_fold_change_by_MHC_v201212_0012.xlsx
BC330_KIR_fold_change_by_MHC_v201211_2348.xlsx		BC330_KIR_fold_change_by_MHC_v201211_2348.xlsx
BC330_KIR_fold_change_by_MHC_v201211_2358.xlsx		BC330_KIR_fold_change_by_MHC_v201211_2358.xlsx
BC336_KIR_fold_change_by_MHC_v200805_0043.xlsx		BC336_KIR_fold_change_by_MHC_v200805_0043.xlsx
BC37_fold_change_by_MHC_v200805_0024.xlsx		BC37_fold_change_by_MHC_v200805_0024.xlsx
BC67_KIR_DP_fold_change_by_MHC_v200805_0038.xlsx		BC67_KIR_DP_fold_change_by_MHC_v200805_0038.xlsx
BC67_KIR_fold_change_by_MHC_v200805_0037.xlsx		BC67_KIR_fold_change_by_MHC_v200805_0037.xlsx
BC69_fold_change_by_MHC_v200805_0038.xlsx		BC69_fold_change_by_MHC_v200805_0038.xlsx
BC71_fold_change_by_MHC_v201211_2346.xlsx		BC71_fold_change_by_MHC_v201211_2346.xlsx
BC85_fold_change_by_MHC_v200805_0039.xlsx		BC85_fold_change_by_MHC_v200805_0039.xlsx
BC_master_file.xlsx		BC_master_file.xlsx
BS0401_fold_change_by_MHC_v200806_1358.xlsx		BS0401_fold_change_by_MHC_v200806_1358.xlsx
BS0901_fold_change_by_MHC_v200806_1359.xlsx		BS0901_fold_change_by_MHC_v200806_1359.xlsx
BS1101_KIR_fold_change_by_MHC_v200806_1359.xlsx		BS1101_KIR_fold_change_by_MHC_v200806_1359.xlsx
BS1201_KIR_fold_change_by_MHC_v200806_1359.xlsx		BS1201_KIR_fold_change_by_MHC_v200806_1359.xlsx
BS1601_KIR_fold_change_by_MHC_v200806_1400.xlsx		BS1601_KIR_fold_change_by_MHC_v200806_1400.xlsx
BS1701_fold_change_by_MHC_v200806_1400.xlsx		BS1701_fold_change_by_MHC_v200806_1400.xlsx
BS1801_fold_change_by_MHC_v200806_1402.xlsx		BS1801_fold_change_by_MHC_v200806_1402.xlsx
BS1901_KIR_fold_change_by_MHC_v200806_1402.xlsx		BS1901_KIR_fold_change_by_MHC_v200806_1402.xlsx
BS1901_fold_change_by_MHC_v200806_1402.xlsx		BS1901_fold_change_by_MHC_v200806_1402.xlsx
BS2001_KIR_DP_fold_change_by_MHC_v200806_1406.xlsx		BS2001_KIR_DP_fold_change_by_MHC_v200806_1406.xlsx
BS2001_KIR_fold_change_by_MHC_v200806_1406.xlsx		BS2001_KIR_fold_change_by_MHC_v200806_1406.xlsx
BS2301_fold_change_by_MHC_v200806_1406.xlsx		BS2301_fold_change_by_MHC_v200806_1406.xlsx
BS3001_KIR_fold_change_by_MHC_v200806_1408.xlsx		BS3001_KIR_fold_change_by_MHC_v200806_1408.xlsx
BS3501_KIR_fold_change_by_MHC_v200806_1408.xlsx		BS3501_KIR_fold_change_by_MHC_v200806_1408.xlsx
BS3701_KIR_fold_change_by_MHC_v200806_1409.xlsx		BS3701_KIR_fold_change_by_MHC_v200806_1409.xlsx
BS3801_fold_change_by_MHC_v200806_1409.xlsx		BS3801_fold_change_by_MHC_v200806_1409.xlsx
BS3901_KIR_fold_change_by_MHC_v200806_1410.xlsx		BS3901_KIR_fold_change_by_MHC_v200806_1410.xlsx
BS3901_fold_change_by_MHC_v200806_1409.xlsx		BS3901_fold_change_by_MHC_v200806_1409.xlsx
BS_master_file.xlsx		BS_master_file.xlsx
README.md		README.md

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Analysing High-throughput Sequencing Data in Immuno oncology.

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