Add Letsencrypt automatic cert generation for platform packages #323
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WalkthroughThe recent changes involve a comprehensive update to the Traefik deployment configuration, focusing on standardizing environment variables and enhancing security settings. Key modifications include replacing specific hostnames with a generic placeholder, introducing new service images, and updating routing and TLS configurations across various services, ensuring improved maintainability and configurability. Changes
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Recent review detailsConfiguration used: CodeRabbit UI Files selected for processing (5)
Files not reviewed due to no reviewable changes (1)
Files skipped from review as they are similar to previous changes (4)
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Files selected for processing (3)
- .env.traefik.remote (1 hunks)
- identity-access-manager-keycloak/docker-compose.yml (2 hunks)
- monitoring/docker-compose.yml (7 hunks)
Additional comments not posted (17)
.env.traefik.remote (7)
54-54: CA_SERVER variable is correctly set.The Let's Encrypt directory URL is correctly specified for certificate generation.
57-57: Ensure GF_SERVER_ROOT_URL placeholder is replaced.The placeholder
<domain>should be replaced with the actual domain for the Grafana server.
58-58: Ensure GF_SERVER_DOMAIN placeholder is replaced.The placeholder
<domain>should be replaced with the actual domain for the Grafana server.
59-59: Ensure MINIO_BROWSER_REDIRECT_URL placeholder is replaced.The placeholder
<domain>should be replaced with the actual domain for the MinIO browser redirect.
60-60: Ensure DOMAIN_NAME_HOST_TRAEFIK placeholder is replaced.The placeholder
<domain>should be replaced with the actual domain for Traefik.
55-55: Verify the availability of the OPENHIM_CORE_IMAGE.The Docker image tag
jembi/openhim-core:prereleaseshould be verified for availability in the Docker registry.Verification successful
Docker Image Available: OPENHIM_CORE_IMAGE
The Docker image
jembi/openhim-core:prereleaseis available on Docker Hub, as confirmed by the HTTP status code 200.Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify the availability of the OPENHIM_CORE_IMAGE in the Docker registry. # Test: Pull the image to check its availability. docker pull jembi/openhim-core:prereleaseLength of output: 117
Script:
#!/bin/bash # Description: Verify the availability of the OPENHIM_CORE_IMAGE using Docker Hub API. # Check if the image exists on Docker Hub. curl -s -o /dev/null -w "%{http_code}" https://hub.docker.com/v2/repositories/jembi/openhim-core/tags/prereleaseLength of output: 118
56-56: Verify the availability of the OPENHIM_CONSOLE_IMAGE.The Docker image tag
jembi/openhim-console:poc-microfrontend-preleaseshould be verified for availability in the Docker registry.Verification successful
OPENHIM_CONSOLE_IMAGE is available in Docker Hub
The Docker image
jembi/openhim-console:poc-microfrontend-preleaseis available in the Docker registry as confirmed by the Docker Hub API.
- The image tag
poc-microfrontend-preleaseexists.Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify the availability of the OPENHIM_CONSOLE_IMAGE in the Docker registry. # Test: Pull the image to check its availability. docker pull jembi/openhim-console:poc-microfrontend-preleaseLength of output: 136
Script:
#!/bin/bash # Description: Check the availability of the OPENHIM_CONSOLE_IMAGE using Docker Hub API. # Query Docker Hub API for the image tag curl -s "https://hub.docker.com/v2/repositories/jembi/openhim-console/tags/poc-microfrontend-prelease" | jq '.name'Length of output: 142
identity-access-manager-keycloak/docker-compose.yml (2)
52-52: Server scheme set to HTTP is appropriate.The
loadbalancer.server.schemeset tohttpis suitable for backend communication.
57-57: Entry point set to websecure is appropriate.The
entrypointssetting towebsecurealigns with security requirements for secure traffic routing.monitoring/docker-compose.yml (8)
13-13: Grafana routing rule is correctly formatted.The
HostandPathPrefixconditions are correctly used for routing Grafana traffic.
14-14: TLS enabled for Grafana is correctly configured.The TLS settings with a certificate resolver ensure secure communication for Grafana.
15-16: Grafana server scheme and entry points are appropriate.The
server.schemeset tohttpandentrypointstowebsecureare suitable for Grafana's communication needs.
18-19: Grafana middleware for stripping prefix is correctly configured.The middleware configuration for stripping the
/grafanaprefix is appropriate for routing.
182-182: Minio routing rule is correctly formatted.The
HostandPathPrefixconditions are correctly used for routing Minio traffic.
184-184: TLS enabled for Minio is correctly configured.The TLS settings with a certificate resolver ensure secure communication for Minio.
185-186: Minio server scheme and entry points are appropriate.The
server.schemeset tohttpandentrypointstowebsecureare suitable for Minio's communication needs.
187-187: Minio middleware for stripping prefix is correctly configured.The middleware configuration for stripping the
/minioprefix is appropriate for routing.
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Files selected for processing (11)
- .env.traefik.remote (1 hunks)
- client-registry-jempi/docker-compose.api.yml (3 hunks)
- client-registry-jempi/docker-compose.web.yml (2 hunks)
- dashboard-visualiser-superset/docker-compose.yml (3 hunks)
- fhir-ig-importer/docker-compose.yml (2 hunks)
- identity-access-manager-keycloak/docker-compose.yml (2 hunks)
- interoperability-layer-openhim/docker-compose.yml (3 hunks)
- kafka-mapper-consumer/docker-compose.yml (2 hunks)
- monitoring/docker-compose.yml (7 hunks)
- reprocess-mediator/docker-compose.yml (2 hunks)
- reverse-proxy-traefik/docker-compose.yml (1 hunks)
Files skipped from review as they are similar to previous changes (2)
- .env.traefik.remote
- identity-access-manager-keycloak/docker-compose.yml
Additional comments not posted (26)
fhir-ig-importer/docker-compose.yml (3)
50-52: Confirm thetraefiknetwork configuration.The
traefiknetwork is defined asreverse-proxy-traefik_publicand marked as external. Ensure this configuration is consistent across the deployment.
22-22: Ensure thetraefiknetwork is correctly configured.The
traefiknetwork has been added to thefhir-ig-importer-uiservice. Verify that this network is properly defined and accessible.Verification successful
The
traefiknetwork is correctly configured.The
traefiknetwork is defined as expected in thedocker-compose.ymlfile, with the correct name and marked as external.
traefiknetwork configuration:
- Name:
reverse-proxy-traefik_public- External:
trueScripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify the existence and configuration of the `traefik` network in `docker-compose.yml`. # Test: Check for the `traefik` network definition. Expect: Network is defined and external. rg --type yaml --no-heading 'traefik:\n\s+name: reverse-proxy-traefik_public\n\s+external: true' fhir-ig-importer/docker-compose.ymlLength of output: 326
Script:
#!/bin/bash # Description: Verify the existence and configuration of the `traefik` network in `docker-compose.yml`. # Test: Check for the `traefik` network definition with multiline mode enabled. rg --type yaml --multiline --no-heading 'traefik:\n\s+name: reverse-proxy-traefik_public\n\s+external: true' fhir-ig-importer/docker-compose.ymlLength of output: 215
27-38: Review Traefik labels for correctness and completeness.The Traefik labels define routing, entry points, TLS, and middleware. Ensure all labels are correctly set and align with the intended routing logic.
Verification successful
Review of Traefik Labels in
docker-compose.ymlThe Traefik labels in the
fhir-ig-importerservice appear to be correctly formatted and cover essential configurations such as enabling Traefik, specifying the network, defining routing rules, entry points, TLS settings, and middleware configurations. Ensure that these labels align with your intended routing logic and check for any additional labels specific to your use case that might be required. If everything aligns with your requirements, no further changes are necessary.
- Labels Present:
traefik.enable=truetraefik.docker.network=reverse-proxy-traefik_publictraefik.http.routers.fhir-ig-importer.rule=PathPrefix(/fhir-ig-importer)traefik.http.routers.fhir-ig-importer.entrypoints=websecuretraefik.http.routers.fhir-ig-importer.tls=truetraefik.http.services.fhir-ig-importer.loadbalancer.server.port=8080traefik.http.services.fhir-ig-importer.loadbalancer.server.scheme=httptraefik.http.routers.fhir-ig-importer.middlewares=fhir-ig-importer-stripprefixtraefik.http.middlewares.fhir-ig-importer-stripprefix.stripprefix.prefixes=/fhir-ig-importerScripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify Traefik labels in the `fhir-ig-importer-ui` service. # Test: Check for the presence of required Traefik labels. Expect: All labels are present and correctly formatted. rg --type yaml --no-heading 'traefik\..+' fhir-ig-importer/docker-compose.ymlLength of output: 735
client-registry-jempi/docker-compose.web.yml (1)
24-29: Validate Traefik HTTPS configuration and redirection.The
jempi-webservice now includes HTTPS entry points, TLS settings, and a redirect middleware. Ensure these configurations are correctly implemented and align with security best practices.Verification successful
Traefik HTTPS Configuration and Redirection Verified
The Traefik configuration for the
jempi-webservice includes appropriate settings for HTTPS entry points, TLS, and redirection middleware. These settings align with security best practices. No issues were found in the configuration.
- HTTPS Entry Points: Configured with
websecure.- TLS Settings: Enabled with a cert resolver.
- Redirection Middleware: Configured for permanent HTTPS redirection.
Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify Traefik HTTPS and redirection settings in the `jempi-web` service. # Test: Check for correct HTTPS entry points, TLS settings, and redirect middleware. Expect: All settings are present and correctly formatted. rg --type yaml --no-heading 'traefik\..+' client-registry-jempi/docker-compose.web.ymlLength of output: 852
reprocess-mediator/docker-compose.yml (3)
54-56: Confirm thetraefiknetwork configuration.The
traefiknetwork is defined asreverse-proxy-traefik_publicand marked as external. Ensure this configuration is consistent across the deployment.
28-39: Review Traefik labels for correctness and completeness.The Traefik labels define routing, entry points, TLS, and middleware. Ensure all labels are correctly set and align with the intended routing logic.
Verification successful
Traefik labels are correctly configured and complete.
The Traefik labels for the
reprocess-mediator-uiservice indocker-compose.ymlcover necessary configurations such as enabling Traefik, network settings, routing rules, load balancing, TLS, entry points, and middleware. They appear correctly formatted and aligned with typical Traefik usage.Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify Traefik labels in the `reprocess-mediator-ui` service. # Test: Check for the presence of required Traefik labels. Expect: All labels are present and correctly formatted. rg --type yaml --no-heading 'traefik\..+' reprocess-mediator/docker-compose.ymlLength of output: 853
25-25: Ensure thetraefiknetwork is correctly configured.The
traefiknetwork has been added to thereprocess-mediator-uiservice. Verify that this network is properly defined and accessible.Verification successful
The
traefiknetwork is correctly configured.The
traefiknetwork is defined with the namereverse-proxy-traefik_publicand is marked as external in thedocker-compose.ymlfile. No further action is needed.Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify the existence and configuration of the `traefik` network in `docker-compose.yml`. # Test: Check for the `traefik` network definition. Expect: Network is defined and external. rg --type yaml --no-heading 'traefik:\n\s+name: reverse-proxy-traefik_public\n\s+external: true' reprocess-mediator/docker-compose.ymlLength of output: 328
Script:
#!/bin/bash # Description: Verify the existence and configuration of the `traefik` network in `docker-compose.yml`. # Test: Check for the `traefik` network definition. Expect: Network is defined and external. rg --type yaml --no-heading --multiline 'traefik:\n\s+name: reverse-proxy-traefik_public\n\s+external: true' reprocess-mediator/docker-compose.ymlLength of output: 217
kafka-mapper-consumer/docker-compose.yml (3)
65-67: Verifytraefikexternal network configuration.Ensure that the
traefiknetwork is correctly defined as external and is necessary for the services.Verification successful
External
traefiknetwork configuration is correct and necessary.The
traefiknetwork is consistently defined as external across multiple services, indicating its role as a shared network for routing traffic, which is typical for setups using Traefik as a reverse proxy. This configuration is both correct and necessary.Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify the external configuration of the `traefik` network. # Test: Check for correct external network definition and necessity. Expect: Valid configuration. rg --type yaml 'traefik:' -A 3Length of output: 7556
31-32: Verify the necessity of thetraefiknetwork.Ensure that the
traefiknetwork is required for thekafka-mapper-consumer-uiservice and that it is correctly configured.
33-43: Verify Traefik label configurations.Ensure that the Traefik labels are correctly set and align with the intended routing and security configurations.
Verification successful
Traefik label configurations are correct.
The Traefik labels for
kafka-mapper-consumer-uiare correctly set and align with best practices for routing, security, and middleware configuration. No further action is needed.Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify Traefik label configurations for `kafka-mapper-consumer-ui`. # Test: Check for correct Traefik label usage and alignment with best practices. Expect: Valid configurations. rg --type yaml 'traefik.http.routers.kafka-mapper-consumer-ui' -A 5Length of output: 1282
reverse-proxy-traefik/docker-compose.yml (1)
49-49: LGTM! Verify the impact of permanent redirect.The permanent redirect configuration for HTTPS is correct and aligns with best practices for SEO and user experience.
Ensure that this change does not inadvertently affect any existing services or client configurations.
Verification successful
Permanent Redirect Configuration Verified
The permanent redirect to HTTPS is correctly configured in the
docker-compose.ymlfile. This change aligns with best practices for security and SEO. No immediate issues or conflicts with existing services or client configurations are evident from the context provided.
- File:
reverse-proxy-traefik/docker-compose.yml- Line: 49
Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify the impact of the permanent redirect configuration. # Test: Check for any potential impact on services or client configurations. Expect: No negative impact. rg --type yaml 'traefik.http.middlewares.to-https.redirectscheme.permanent=true' -A 5Length of output: 557
client-registry-jempi/docker-compose.api.yml (4)
36-36: LGTM! Verify the load balancer scheme configuration.The load balancer scheme for
jempi-apiis correctly set tohttpand aligns with the intended communication protocol.Ensure that the load balancer scheme is correctly defined and used in the Traefik configuration.
Verification successful
Configuration Verification: Load Balancer Scheme and Redirect
The load balancer scheme for
jempi-apiis initially set tohttp, with a middleware redirect tohttps. This configuration is typical for enforcing secure connections. Ensure that this setup aligns with your intended behavior and does not introduce any issues in your deployment.
- File:
client-registry-jempi/docker-compose.api.yml- Lines:
- traefik.http.services.jempi-api.loadbalancer.server.scheme=http- traefik.http.middlewares.jempi-api-redirect.redirectscheme.scheme=https- traefik.http.middlewares.jempi-api-redirect.redirectscheme.permanent=trueScripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify the load balancer scheme configuration for `jempi-api`. # Test: Check for correct definition and usage of the load balancer scheme. Expect: Valid configuration. rg --type yaml 'traefik.http.services.jempi-api.loadbalancer.server.scheme=http' -A 5Length of output: 629
33-33: LGTM! Verify thewebsecureentry point configuration.The entry point configuration for
jempi-apiis correct and aligns with secure traffic handling practices.Ensure that the
websecureentry point is correctly defined and used in the Traefik configuration.Verification successful
The
websecureentry point configuration is correctly set up for secure traffic handling.The configuration includes TLS settings and a redirection middleware to HTTPS, which aligns with best practices for secure traffic management.
- File:
client-registry-jempi/docker-compose.api.yml- Lines:
traefik.http.routers.jempi-api.tls=truetraefik.http.routers.jempi-api.tls.certresolver=${CERT_RESOLVER}traefik.http.middlewares.jempi-api-redirect.redirectscheme.scheme=httpstraefik.http.middlewares.jempi-api-redirect.redirectscheme.permanent=trueScripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify the `websecure` entry point configuration for `jempi-api`. # Test: Check for correct definition and usage of the `websecure` entry point. Expect: Valid configuration. rg --type yaml 'traefik.http.routers.jempi-api.entrypoints=websecure' -A 5Length of output: 772
34-35: LGTM! Verify the TLS configuration and certificate resolver.The TLS configuration for
jempi-apiis correct and aligns with best practices for secure connections.Ensure that the TLS settings and certificate resolver are correctly defined and used.
Verification successful
TLS Configuration Verified for
jempi-apiThe TLS settings for
jempi-apiare correctly configured with a certificate resolver. Additionally, there is a middleware in place to redirect traffic from HTTP to HTTPS, which aligns with best practices for secure connections.
- TLS is enabled:
traefik.http.routers.jempi-api.tls=true- Certificate resolver is set:
traefik.http.routers.jempi-api.tls.certresolver=${CERT_RESOLVER}- HTTP to HTTPS redirection is configured.
Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify the TLS configuration and certificate resolver for `jempi-api`. # Test: Check for correct TLS settings and certificate resolver usage. Expect: Valid configuration. rg --type yaml 'traefik.http.routers.jempi-api.tls=true' -A 5Length of output: 697
37-38: LGTM! Verify the middleware redirect scheme configuration.The middleware redirect scheme for
jempi-apiis correctly set tohttpswith a permanent redirect, aligning with best practices for secure connections.Ensure that the redirect scheme and permanent setting are correctly defined and used in the Traefik configuration.
Verification successful
Middleware Redirect Scheme Configuration Verified
The middleware redirect scheme for
jempi-apiis correctly set tohttpswith a permanent redirect. This configuration aligns with best practices for secure connections. No issues found.Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify the middleware redirect scheme configuration for `jempi-api`. # Test: Check for correct definition and usage of the redirect scheme and permanent setting. Expect: Valid configuration. rg --type yaml 'traefik.http.middlewares.jempi-api-redirect.redirectscheme.permanent=true' -A 5Length of output: 549
Script:
#!/bin/bash # Description: Verify the middleware redirect scheme configuration for `jempi-api`. # Test: Check for correct definition and usage of the redirect scheme to `https`. Expect: Valid configuration. rg --type yaml 'traefik.http.middlewares.jempi-api-redirect.redirectscheme.scheme=https' -A 5Length of output: 607
dashboard-visualiser-superset/docker-compose.yml (3)
12-12: Ensure the server scheme is correct.The server scheme is set to
http. Verify that this is intentional and that the service does not requirehttpsat this level.
13-15: TLS configuration looks good.The addition of TLS settings enhances security by enforcing HTTPS connections. Ensure that
${CERT_RESOLVER}is correctly configured in your environment.
16-18: Verify middleware configuration.The middleware for HTTPS redirection is correctly set up. Ensure that the middleware name
dashboard-visualiser-superset-redirectis unique and does not conflict with other services.interoperability-layer-openhim/docker-compose.yml (3)
55-55: Dynamic TLS resolver configuration is beneficial.The use of
${CERT_RESOLVER-le}allows for flexibility by providing a default. Ensure that the environment variable is set correctly to avoid fallback issues.Also applies to: 64-64
95-95: Check domain consistency.The change from
${DOMAIN_NAME}to${DOMAIN_NAME_HOST_TRAEFIK}should be consistent across all related services to avoid routing issues.
97-99: Middleware for HTTPS redirection is well-configured.The middleware addition enhances security by enforcing HTTPS. Verify that the middleware name
openhim-console-redirectis unique across services.monitoring/docker-compose.yml (5)
14-15: Routing rule and TLS settings for Grafana are correct.The changes ensure secure access and proper routing. Ensure that
${DOMAIN_NAME_HOST_TRAEFIK}is consistently used across configurations.
16-18: Verify server scheme and entrypoints.The server scheme is set to
http, and the entrypoint iswebsecure. Ensure this configuration aligns with the intended setup and that secure access is enforced.
21-22: Middleware for HTTPS redirection is correctly set.The middleware ensures HTTPS enforcement. Confirm that
grafana-redirectdoes not conflict with other middleware configurations.
186-188: Minio routing and TLS settings are appropriate.The changes ensure that Minio traffic is securely routed. Verify that the TLS settings and domain configurations are consistent with other services.
189-191: Check Minio server scheme and entrypoints.The server scheme is
http, and the entrypoint iswebsecure. Ensure this is intentional and aligns with the overall security strategy.
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Actionable comments posted: 1
Review details
Configuration used: CodeRabbit UI
Review profile: CHILL
Files selected for processing (11)
- .env.traefik.remote (1 hunks)
- client-registry-jempi/docker-compose.api.yml (3 hunks)
- client-registry-jempi/docker-compose.web.yml (2 hunks)
- dashboard-visualiser-superset/docker-compose.yml (3 hunks)
- fhir-ig-importer/docker-compose.yml (2 hunks)
- identity-access-manager-keycloak/docker-compose.yml (2 hunks)
- interoperability-layer-openhim/docker-compose.yml (2 hunks)
- kafka-mapper-consumer/docker-compose.yml (2 hunks)
- monitoring/docker-compose.yml (7 hunks)
- reprocess-mediator/docker-compose.yml (2 hunks)
- reverse-proxy-traefik/docker-compose.yml (2 hunks)
Additional comments not posted (47)
fhir-ig-importer/docker-compose.yml (2)
22-22: Verify network name.Ensure that the
traefiknetwork is correctly named and configured in the Docker network settings.
27-38: Verify environment variables.Ensure that the environment variables
${WEB_ENTRY_POINT}and${TLS}are correctly set and used in the Traefik configuration.client-registry-jempi/docker-compose.web.yml (1)
24-29: Verify environment variables.Ensure that the environment variables
${WEB_ENTRY_POINT},${TLS},${CERT_RESOLVER}, and${REDIRECT_TO_HTTPS}are correctly set and used in the Traefik configuration.reprocess-mediator/docker-compose.yml (2)
25-39: Verify environment variables.Ensure that the environment variables
${WEB_ENTRY_POINT}and${TLS}are correctly set and used in the Traefik configuration.
54-56: Verify network name.Ensure that the
traefiknetwork is correctly named and configured in the Docker network settings..env.traefik.remote (10)
29-29: LGTM!The change to use a generic placeholder for
OPENHIM_CORE_MEDIATOR_HOSTNAMEenhances configurability.The code changes are approved.
34-34: LGTM!The change to use a generic placeholder for
DOMAIN_NAMEenhances configurability.The code changes are approved.
35-35: LGTM!The change to use a generic placeholder for
SUBDOMAINSenhances configurability.The code changes are approved.
40-40: LGTM!The change to use a generic placeholder for
KC_FRONTEND_URLenhances configurability.The code changes are approved.
41-41: LGTM!The change to use a generic placeholder for
KC_GRAFANA_ROOT_URLenhances configurability.The code changes are approved.
42-42: LGTM!The change to use a generic placeholder for
KC_JEMPI_ROOT_URLenhances configurability.The code changes are approved.
43-43: LGTM!The change to use a generic placeholder for
KC_SUPERSET_ROOT_URLenhances configurability.The code changes are approved.
44-44: LGTM!The change to use a generic placeholder for
KC_OPENHIM_ROOT_URLenhances configurability.The code changes are approved.
48-48: LGTM!The change to use a generic placeholder for
OPENHIM_CONSOLE_BASE_URLenhances configurability.The code changes are approved.
49-49: LGTM!The change to use a generic placeholder for
OPENHIM_API_HOSTenhances configurability.The code changes are approved.
kafka-mapper-consumer/docker-compose.yml (3)
31-32: LGTM!The addition of the
traefiknetwork enhances the routing capabilities of thekafka-mapper-consumer-uiservice.The code changes are approved.
33-43: LGTM!The deployment specifications for
kafka-mapper-consumer-uiconfigure routing rules, load balancing, and middleware settings effectively.The code changes are approved.
65-67: LGTM!The addition of the
traefiknetwork enhances the routing capabilities of the services.The code changes are approved.
reverse-proxy-traefik/docker-compose.yml (4)
25-25: LGTM!The change to use the
${TLS_CHALLENGE}environment variable enhances flexibility and configurability.The code changes are approved.
44-44: LGTM!The change to use the
${TLS}environment variable enhances flexibility and configurability.The code changes are approved.
45-45: LGTM!The change to include a default empty string fallback for the
certresolveroption ensures robustness.The code changes are approved.
49-49: LGTM!The change to use the
${REDIRECT_TO_HTTPS}environment variable enhances flexibility and configurability.The code changes are approved.
identity-access-manager-keycloak/docker-compose.yml (6)
6-6: LGTM!The command declaration is simplified, enhancing readability without altering functionality.
The code changes are approved.
46-46: LGTM!The Traefik configuration for the load balancer's server scheme is correctly specified as HTTP.
The code changes are approved.
49-49: LGTM!The Traefik configuration for TLS is correctly specified, enhancing security by enabling HTTPS.
The code changes are approved.
51-51: LGTM!The Traefik configuration for entry points is correctly specified, ensuring proper traffic management.
The code changes are approved.
52-52: LGTM!The Traefik middleware for redirecting HTTP traffic to HTTPS is correctly specified, improving security by ensuring all traffic is encrypted.
The code changes are approved.
53-53: LGTM!The Traefik middleware configuration for permanent redirection is correctly specified, ensuring that the redirection is consistently enforced.
The code changes are approved.
client-registry-jempi/docker-compose.api.yml (6)
33-33: LGTM!The Traefik configuration for entry points is correctly specified, ensuring proper traffic management.
The code changes are approved.
34-34: LGTM!The Traefik configuration for TLS is correctly specified, enhancing security by enabling HTTPS.
The code changes are approved.
35-35: LGTM!The Traefik configuration for the TLS certificate resolver is correctly specified, ensuring that the correct certificates are used for HTTPS.
The code changes are approved.
36-36: LGTM!The Traefik configuration for the load balancer's server scheme is correctly specified as HTTP.
The code changes are approved.
37-37: LGTM!The Traefik middleware for redirecting HTTP traffic to HTTPS is correctly specified, improving security by ensuring all traffic is encrypted.
The code changes are approved.
38-38: LGTM!The Traefik middleware configuration for permanent redirection is correctly specified, ensuring that the redirection is consistently enforced.
The code changes are approved.
dashboard-visualiser-superset/docker-compose.yml (7)
12-12: LGTM!The Traefik configuration for the load balancer's server scheme is correctly specified as HTTP.
The code changes are approved.
13-13: LGTM!The Traefik configuration for entry points is correctly specified, ensuring proper traffic management.
The code changes are approved.
14-14: LGTM!The Traefik configuration for TLS is correctly specified, enhancing security by enabling HTTPS.
The code changes are approved.
15-15: LGTM!The Traefik configuration for the TLS certificate resolver is correctly specified, ensuring that the correct certificates are used for HTTPS.
The code changes are approved.
16-16: LGTM!The Traefik middleware for redirecting HTTP traffic to HTTPS is correctly specified, improving security by ensuring all traffic is encrypted.
The code changes are approved.
17-17: LGTM!The Traefik middleware configuration for the redirect scheme is correctly specified as HTTPS, ensuring that all HTTP traffic is redirected to HTTPS.
The code changes are approved.
18-18: LGTM!The Traefik middleware configuration for permanent redirection is correctly specified, ensuring that the redirection is consistently enforced.
The code changes are approved.
interoperability-layer-openhim/docker-compose.yml (3)
50-55: Verify environment variables.Ensure that
${TLS},${WEB_ENTRY_POINT}, and${CERT_RESOLVER-""}are defined and correctly utilized in the environment.Run the following script to verify the environment variables:
93-99: Verify environment variables and middleware configurations.Ensure that
${WEB_ENTRY_POINT},${TLS}, and${DOMAIN_NAME_HOST_TRAEFIK}are defined and correctly utilized in the environment. Verify the new middleware configurations for HTTPS redirection.Run the following script to verify the environment variables and middleware configurations:
59-64: Verify environment variables.Ensure that
${TLS},${WEB_ENTRY_POINT}, and${CERT_RESOLVER-""}are defined and correctly utilized in the environment.Run the following script to verify the environment variables:
monitoring/docker-compose.yml (3)
179-185: Verify environment variables.Ensure that
${DOMAIN_NAME_HOST_TRAEFIK},${TLS}, and${WEB_ENTRY_POINT}are defined and correctly utilized in the environment.Run the following script to verify the environment variables:
50-50: Verify environment variable.Ensure that
${GF_SERVER_ROOT_URL}is defined and correctly utilized in the environment.Run the following script to verify the environment variable:
14-23: Verify environment variables and middleware configurations.Ensure that
${DOMAIN_NAME_HOST_TRAEFIK},${TLS},${WEB_ENTRY_POINT},${CERT_RESOLVER-le}, and${REDIRECT_TO_HTTPS}are defined and correctly utilized in the environment. Verify the new middleware configurations for HTTPS redirection.Run the following script to verify the environment variables and middleware configurations:
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documentation/packages/reverse-proxy-traefik/environment-variables.md (1)
1-3: LGTM!The header and introductory section are clear and concise.
The content is approved.
.env.traefik.remote (3)
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1-14: LGTM!The general and log sections are clear and accurate.
The content is approved.
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15-28: LGTM!The data mapper, dashboard visualiser, and message bus sections are clear and accurate.
The content is approved.
29-67: LGTM!The reverse proxy, identity access manager, and Traefik labels sections are clear and accurate.
The content is approved.
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Files selected for processing (2)
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.env.traefik.remote (7)
29-29: Standardization of Hostname for OpenHIM Core MediatorThe change from a specific ngrok URL to a generic 'domain' placeholder is a positive move towards making the configuration more environment-agnostic. This will facilitate easier management and deployment across different environments.
The change aligns with the PR's objectives of enhancing configurability and maintainability.
34-34: Domain Name StandardizationReplacing specific hostnames with a generic 'domain' placeholder across the configuration file supports the PR's goal of standardization and simplifies the process of domain management.
This change is crucial for maintaining consistency and ease of configuration updates.
35-35: Subdomains ConfigurationListing all relevant subdomains in one place enhances clarity and manageability. This change is well-aligned with the PR's objectives of improving the configurability and standardization of the environment settings.
The comprehensive list of subdomains ensures that all necessary services are considered and properly configured.
40-44: Keycloak and Related Services URL StandardizationThe update to use a consistent 'domain' placeholder for Keycloak and other service URLs is a significant improvement. It ensures that the URLs are flexible and adaptable to any domain changes without requiring multiple configuration updates.
This change enhances the security and flexibility of the service configurations.
48-49: OpenHIM Console and API Host ConfigurationStandardizing the OpenHIM console and API host to use the 'domain' placeholder aligns with the PR's objectives to make the environment more manageable and secure.
This is a critical update for ensuring that the OpenHIM services are easily configurable and secure.
51-57: Service Images and Domain ConfigurationsThe introduction of specific service images and the consistent use of the 'domain' placeholder across various services supports the PR's goals of standardization and enhanced security.
These changes are essential for ensuring that the services are up-to-date and securely configured.
58-58: Grafana Server ConfigurationSetting
GF_SERVER_SERVE_FROM_SUB_PATHtotrueensures that Grafana is correctly configured to serve from a subpath, which can be crucial for reverse proxy setups and security.This setting is important for the correct functioning and security of Grafana within the platform.
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Actionable comments posted: 1
Outside diff range and nitpick comments (5)
kafka-mapper-consumer/package-metadata.json (1)
Security: Multiple instances of sensitive information found in plain text
The verification process has identified several instances where sensitive information such as passwords, secrets, keys, and tokens are stored in plain text within JSON files across the repository. This poses significant security risks, especially if the repository is publicly accessible or if unauthorized personnel gain access.
Affected Files:
reverse-proxy-traefik/package-metadata.jsonfhir-ig-importer/package-metadata.jsondatabase-postgres/package-metadata.jsonopenhim-mapping-mediator/package-metadata.jsonmpi-mediator/package-metadata.jsonmonitoring/package-metadata.jsonreprocess-mediator/package-metadata.jsonmonitoring/grafana/dashboards/security/auditlogs.jsonkafka-mapper-consumer/package-metadata.jsoninteroperability-layer-openhim/package-metadata.jsonidentity-access-manager-keycloak/package-metadata.jsonidentity-access-manager-keycloak/config/jempi.jsoninteroperability-layer-openhim/importer/volume/openhim-import.jsonidentity-access-manager-keycloak/config/openhim.jsonidentity-access-manager-keycloak/config/grafana.jsonidentity-access-manager-keycloak/config/superset.jsondashboard-visualiser-superset/package-metadata.jsondashboard-visualiser-superset/config/client_secret_env.jsonfhir-datastore-hapi-fhir/package-metadata.jsondashboard-visualiser-kibana/package-metadata.jsonclient-registry-santempi/package-metadata.jsonclient-registry-jempi/package-metadata.jsondashboard-visualiser-jsreport/package-metadata.jsonanalytics-datastore-clickhouse/package-metadata.jsonRecommendations:
Remove Sensitive Data from Version Control:
- Extract all sensitive information from the JSON files and utilize environment variables or a secure secrets management system (e.g., AWS Secrets Manager, HashiCorp Vault) to handle these credentials.
Implement Environment-Specific Configurations:
- For configurations that are environment-specific (e.g., development, staging, production), maintain separate configuration files or use environment variables to manage differences without exposing sensitive data.
Audit Repository for Exposed Secrets:
- Conduct a comprehensive audit of the repository to ensure no sensitive information is inadvertently exposed. Consider using automated tools like
git-secretsorTruffleHogto scan the repository for any remaining secrets.Update Documentation:
- Ensure that all setup and deployment documentation reflects the changes in how sensitive data is managed, guiding developers on how to configure their environments securely.
Rotate Exposed Credentials:
- Immediately rotate any credentials that were exposed in the repository to mitigate potential security breaches.
Analysis chain
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8-24: Security: Avoid storing sensitive information in plain textThe
package-metadata.jsonfile contains sensitive information such as passwords and API keys in plain text. This is a security risk, especially if this file is stored in version control.Consider the following improvements:
- Remove sensitive data from this file and use environment variables or a secure secrets management system instead.
- For development-specific configurations (like
TRUST_SELF_SIGNEDor passwords containing "dev"), consider using a separate configuration file for development environments.Example refactor for sensitive data:
- "OPENHIM_PASSWORD": "instant101", + "OPENHIM_PASSWORD": "${OPENHIM_PASSWORD}", - "CLICKHOUSE_PASSWORD": "dev_password_only", + "CLICKHOUSE_PASSWORD": "${CLICKHOUSE_PASSWORD}",Let's check for other potential sensitive data in the repository:
This will help identify other instances where sensitive data might be exposed.
Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Search for potential passwords or keys in json files rg -t json '(?i)(password|secret|key|token)":?\s*"[^"]+"'Length of output: 24750
Script:
#!/bin/bash # Corrected script to search for potential passwords or keys in json files rg -t json '(?i)(password|secret|key|token)":?\s*"[^"]+"'Length of output: 24656
Script:
#!/bin/bash # Refined script to search for potential passwords or keys in json files, excluding $$hashKey entries rg -t json '(?!.*\$\$hashKey)(?i)(password|secret|key|token)":?\s*"[^"]+"'Length of output: 341
Script:
#!/bin/bash # Refined script to search for potential passwords or keys in json files, excluding $$hashKey entries rg -t json '(?i)(password|secret|key|token)":?\s*"[^"]+"' | grep -v '\$\$hashKey'Length of output: 4975
client-registry-jempi/importer/openhim/docker-compose.config.yml (1)
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1-40: Overall, the changes look good and align with standardization efforts.The modifications to the digest variable names in the
configssection are consistent and improve the clarity of the configuration. These changes support the PR's objective of enhancing the platform's configuration for Letsencrypt automatic cert generation.To ensure a smooth integration:
- Verify that the new
jempi_prefixed variables are properly defined in the environment or relevant configuration files.- Update any documentation or deployment scripts that might reference these variables.
- Consider adding a comment in the file explaining the naming convention for future maintainers.
client-registry-jempi/importer/openhim/openhimConfig.js (1)
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1-54: Overall recommendations for improving security and configurationWhile the changes in this file are minimal, there are several areas where the code could be improved:
Configuration Management: Consider moving all configuration variables (OPENHIM_CORE_SERVICE_NAME, OPENHIM_MEDIATOR_API_PORT, etc.) to a separate configuration file or environment variables. This would make it easier to manage different environments (development, staging, production) without changing the code.
HTTPS Configuration: The code uses the
httpsmodule, but there's no verification of the server's SSL certificate. Consider adding options for proper SSL verification:const options = { // ... other options ... rejectUnauthorized: true, // Verify SSL certificate ca: fs.readFileSync('/path/to/ca/cert'), // Provide CA cert if using a self-signed certificate };
Error Handling: Improve error handling by providing more detailed error messages and potentially implementing retry logic for transient errors.
Logging: Consider implementing a proper logging mechanism instead of using console.log and console.error. This will help with debugging and monitoring in production environments.
Code Structure: The file mixes configuration, HTTP request logic, and error handling. Consider refactoring into separate modules for better maintainability.
These improvements will enhance the security, maintainability, and robustness of the OpenHIM configuration process. Would you like me to provide more detailed suggestions for any of these areas?
test/cucumber/features/steps/recipesSteps.js (2)
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11-13: Consider separating host configurations for different servicesCurrently, the
HOSTvariable is used for both the CDR and ClickHouse services. This might lead to confusion or issues if these services are deployed on different hosts.Consider separating the host configurations:
const CDR_HOST = process.env.CDR_HOST || "localhost"; const CLICKHOUSE_HOST = process.env.CLICKHOUSE_HOST || "localhost";Then update the relevant parts of the code to use these specific host variables.
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46-48: Optimize wait time in CDR configuration stepThe current implementation uses a static wait time of 5 minutes (300000ms), which seems excessive and could slow down the test suite unnecessarily.
Consider implementing a more dynamic approach:
- Use a shorter initial wait time.
- Implement a polling mechanism to check if the CDR is ready.
- Use a maximum timeout to prevent indefinite waiting.
Example:
Given("I have configured the cdr", async function () { const maxWaitTime = 300000; // 5 minutes const pollInterval = 5000; // 5 seconds const startTime = Date.now(); while (Date.now() - startTime < maxWaitTime) { try { // Attempt to configure the CDR const organization = JSON.parse( fs.readFileSync( path.resolve(__dirname, "..", "resources", "organization.json") ) ); this.cdrConfigResult = await sendRequest( `http://${CDR_HOST}:5001/fhir`, "POST", organization ); return; // Success, exit the function } catch (error) { // If failed, wait for the poll interval before trying again await new Promise(resolve => setTimeout(resolve, pollInterval)); } } throw new Error("Timed out waiting for CDR to be ready"); });This approach will be more efficient and provide better feedback if there are issues with the CDR configuration.
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Files selected for processing (5)
- client-registry-jempi/importer/openhim/docker-compose.config.yml (1 hunks)
- client-registry-jempi/importer/openhim/openhimConfig.js (1 hunks)
- kafka-mapper-consumer/package-metadata.json (1 hunks)
- test/cucumber/features/single-mode/recipe.feature (0 hunks)
- test/cucumber/features/steps/recipesSteps.js (1 hunks)
Files not reviewed due to no reviewable changes (1)
- test/cucumber/features/single-mode/recipe.feature
Additional comments not posted (8)
kafka-mapper-consumer/package-metadata.json (2)
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1-24: Consider adding Letsencrypt configurationThe PR objectives mention adding Letsencrypt automatic cert generation, but there are no obvious configurations related to this in the current file.
Let's check if Letsencrypt configurations have been added elsewhere:
If no results are found, consider adding the necessary configurations to support Letsencrypt automatic cert generation as per the PR objectives.
Verification successful
Verified: Letsencrypt configurations are present in the codebase
Letsencrypt configurations have been successfully integrated within the
reverse-proxy-traefikandreverse-proxy-nginxsetups, ensuring automatic certificate generation as per the PR objectives. There is no need to add Letsencrypt configurations to thekafka-mapper-consumer/package-metadata.jsonfile.Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Search for Letsencrypt related configurations rg -i 'letsencrypt|certbot|acme'Length of output: 24750
Script:
#!/bin/bash # Search for Letsencrypt related configurations rg -i 'letsencrypt|certbot|acme'Length of output: 12045
5-5: Confirm the implications of changing the package type to "infrastructure"The package type has been changed from "use-case" to "infrastructure". This change aligns with the PR objective of adding Letsencrypt automatic cert generation for platform packages, suggesting that the kafka-mapper-consumer is now considered part of the infrastructure supporting this feature.
While this change doesn't directly affect the package's functionality, it may impact how the package is treated in the broader system architecture, deployment processes, or documentation. Please ensure that:
- This change is intentional and aligns with the project's architectural decisions.
- Any systems or processes that rely on the package type (e.g., deployment scripts, documentation generators) are updated accordingly.
- The team is aware of this categorization change and understands its implications.
To ensure consistency across the project, let's check if similar changes have been made to other packages:
This will help verify if this is part of a broader refactoring effort or an isolated change.
client-registry-jempi/importer/openhim/docker-compose.config.yml (2)
27-27: LGTM! Verify the new environment variable.The change to include the
jempi_prefix in the digest variable name is consistent with standardization efforts. This improves clarity and reduces the risk of naming conflicts.To ensure the new variable is properly defined, please run the following script:
32-32: LGTM! Verify the new environment variable.The change to include the
jempi_prefix in the digest variable name is consistent with the previous modification and overall standardization efforts. This improves clarity and reduces the risk of naming conflicts.To ensure the new variable is properly defined, please run the following script:
client-registry-jempi/importer/openhim/openhimConfig.js (1)
9-11: Security: Remove default credentials from the codeWhile the change from single to double quotes is just a style update, there are security concerns with the current implementation:
- The code contains a default password ("instant101"). Hardcoding passwords, even as fallbacks, is a security risk.
- A default email address is used for the username, which could be exploited if left unchanged in a production environment.
Consider the following improvements:
- Remove the fallback values and make these environment variables required:
const OPENHIM_API_PASSWORD = process.env.OPENHIM_API_PASSWORD; const OPENHIM_API_USERNAME = process.env.OPENHIM_API_USERNAME; if (!OPENHIM_API_PASSWORD || !OPENHIM_API_USERNAME) { throw new Error("OPENHIM_API_PASSWORD and OPENHIM_API_USERNAME must be set"); }
If fallback values are necessary for development, consider using a separate configuration file for development environments, which is not committed to the repository.
Implement a secure method to manage and rotate these credentials, such as using a secrets management service.
To ensure these credentials are not used elsewhere, run the following:
#!/bin/bash # Description: Check for hardcoded credentials in the codebase # Test: Search for the default password rg --type js --type json 'instant101' # Test: Search for the default email rg --type js --type json '[email protected]'If any results are found, they should be reviewed and updated to use secure credential management practices.
test/cucumber/features/steps/recipesSteps.js (3)
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1-156: Summary of review findingsOverall, the changes introduce basic authentication for ClickHouse, which is a step in the right direction for security. However, there are several areas where the code can be improved:
- Replace hardcoded ClickHouse credentials with environment variables.
- Separate host configurations for different services.
- Optimize the wait time in the CDR configuration step.
- Enhance the security and flexibility of the authorization header.
These changes will improve the security, maintainability, and efficiency of the test suite. Please consider implementing these suggestions to make the code more robust and adaptable to different environments.
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31-35: Enhance security and flexibility of authorization headerThe current implementation uses a static value "Custom test" for the Authorization header, which may not be secure or flexible enough for different environments or test scenarios.
Consider using an environment variable for the authorization token:
const sendRequest = (url, method = "POST", data = {}) => { return axios({ url, headers: { "Content-Type": "application/fhir+json", Authorization: `Bearer ${process.env.API_TOKEN || 'test_token'}`, }, data, method, }); };This change allows for more flexible and secure token management across different environments.
To ensure the authorization header is used consistently, run:
#!/bin/bash # Search for usage of authorization headers in API calls rg -t js 'Authorization.*:'
22-25: Improve security by using environment variables for ClickHouse credentialsWhile adding basic authentication for ClickHouse is a good security practice, hardcoding credentials in the source code poses significant risks:
- The current password "dev_password_only" appears to be for development purposes and is weak.
- Hardcoded credentials may accidentally be used in non-development environments.
- Storing sensitive information in version control is a security anti-pattern.
Consider the following improvements:
- Use environment variables for both username and password:
basicAuth: { username: process.env.CLICKHOUSE_USERNAME || 'default', password: process.env.CLICKHOUSE_PASSWORD, },
- Ensure that the
CLICKHOUSE_PASSWORDenvironment variable is set before running the tests.- Update your documentation or README to explain how to set up these environment variables.
- If this file is specifically for development/testing, consider adding a comment to clarify its purpose and usage.
To ensure no other hardcoded credentials exist, run:
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kafka-mapper-consumer-uiwith Traefik integration.Documentation