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Cu 86bzt2p80 enhance fhir ig importer platform package registration json to be configurable #317

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drizzentic
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@drizzentic drizzentic commented Jul 30, 2024

Summary by CodeRabbit

  • New Features

    • Introduced support for an environment variable, OPENHIM_CONSOLE_BASE_URL, enhancing service configuration across multiple components.
    • Updated URL configurations in various applications to use a generic placeholder format for improved flexibility.
  • Bug Fixes

    • Corrected the URL format in the configuration files for clarity by transitioning from relative to absolute URLs.
  • Documentation

    • Updated configuration files to include necessary environment variables for better service interaction.

@rcrichton
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coderabbitai bot commented Jul 30, 2024

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Review failed

The pull request is closed.

Walkthrough

The recent changes enhance configuration flexibility across several services by introducing a new environment variable, OPENHIM_CONSOLE_BASE_URL, and updating multiple URLs to use generic placeholders. This improvement facilitates better integration with the OpenHIM infrastructure, allowing applications to dynamically adapt their endpoint references based on the environment.

Changes

Files & Groups Change Summary
fhir-ig-importer/.../docker-compose.config.yml, kafka-mapper-consumer/.../docker-compose.config.yml, reprocess-mediator/.../docker-compose.config.yml Added OPENHIM_CONSOLE_BASE_URL environment variable for service configuration.
fhir-ig-importer/.../ig-importer-app.json, kafka-mapper-consumer/.../consumer-ui-app.json, reprocess-mediator/.../reprocess-ui-app.json Updated specific URLs to placeholder formats for flexibility.
fhir-ig-importer/.../package-metadata.json, kafka-mapper-consumer/.../package-metadata.json, reprocess-mediator/.../package-metadata.json, interoperability-layer-openhim/.../package-metadata.json Added or modified OPENHIM_CONSOLE_BASE_URL entries, standardizing to "http://localhost:9000".
fhir-ig-importer/.../openhimConfig.js, kafka-mapper-consumer/.../openhimConfig.js, reprocess-mediator/.../openhimConfig.js Introduced functionality to replace placeholder URLs with values from OPENHIM_CONSOLE_BASE_URL.

Sequence Diagram(s)

sequenceDiagram
    participant Service as Service
    participant Env as Environment
    participant Config as Configuration
    participant OpenHIM as OpenHIM Console

    Service->>Env: Request OPENHIM_CONSOLE_BASE_URL
    Env-->>Service: Provide URL
    Service->>Config: Update URL with OPENHIM_CONSOLE_BASE_URL
    Config->>OpenHIM: Interact using updated URL
Loading

Poem

🐇 In the garden of code, we hop and play,
With URLs fresh, in a lively array.
A console awaits, in the soft morning light,
OpenHIM beckons, a wonderful sight!
So let’s dance with our changes, all merry and bright,
For flexibility blooms, like flowers in flight! 🌼


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@drizzentic drizzentic marked this pull request as ready for review July 30, 2024 14:56
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Actionable comments posted: 3

Outside diff range, codebase verification and nitpick comments (2)
reprocess-mediator/reprocess-ui-app.json (1)

6-6: Placeholder URL <openhim-console-url> not replaced

The placeholder URL <openhim-console-url> is still present in multiple JSON files, indicating that it hasn't been replaced with the actual URL in the deployment environment. This needs to be addressed to ensure proper configuration.

  • reprocess-mediator/reprocess-ui-app.json
  • kafka-mapper-consumer/consumer-ui-app.json
  • fhir-ig-importer/importer/volume/ig-importer-app.json
Analysis chain

LGTM! Verify the placeholder URL usage.

The URL has been updated to use a placeholder for the OpenHIM console, which enhances flexibility.

Ensure that the placeholder <openhim-console-url> is correctly replaced with the actual URL in the deployment environment.

Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify that the placeholder URL is correctly replaced in the deployment environment.

# Test: Search for the placeholder URL. Expect: No occurrences of the placeholder URL.
rg --type json '<openhim-console-url>'

Length of output: 344

kafka-mapper-consumer/consumer-ui-app.json (1)

6-6: Placeholder URL Replacement Issue

The placeholder URL <openhim-console-url> is still present in multiple files and no deployment scripts or configuration files were found to handle its replacement. Ensure that this placeholder is correctly replaced with the actual URL during the deployment process to avoid potential runtime errors or misconfigurations.

  • reprocess-mediator/reprocess-ui-app.json
  • kafka-mapper-consumer/consumer-ui-app.json
  • fhir-ig-importer/importer/volume/ig-importer-app.json
  • reprocess-mediator/openhimConfig.js
  • kafka-mapper-consumer/openhimConfig.js
  • fhir-ig-importer/importer/volume/openhimConfig.js
Analysis chain

LGTM! Verify the placeholder URL usage.

The URL has been updated to use a placeholder for the OpenHIM console, which enhances flexibility.

Ensure that the placeholder <openhim-console-url> is correctly replaced with the actual URL in the deployment environment.


We found occurrences of the placeholder URL <openhim-console-url> in multiple JSON files. To ensure that this placeholder is correctly replaced with the actual URL during deployment, we need to check for any deployment scripts or configuration files that handle this replacement.

Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify that the placeholder URL is correctly replaced in the deployment environment.

# Test: Search for the placeholder URL. Expect: No occurrences of the placeholder URL.
rg --type json '<openhim-console-url>'

Length of output: 344


Script:

#!/bin/bash
# Search for deployment scripts or configuration files that might handle the replacement of the placeholder URL.

# Look for scripts in common deployment directories
fd -e sh -e yaml -e yml -e json -e js -e ts -e py -e rb -e cfg -e conf -e properties

# Search for the placeholder URL in these scripts and configuration files
rg '<openhim-console-url>' $(fd -e sh -e yaml -e yml -e json -e js -e ts -e py -e rb -e cfg -e conf -e properties)

Length of output: 28933

Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

Commits

Files that changed from the base of the PR and between 7cfa3f1 and 0b92608.

Files selected for processing (13)
  • fhir-ig-importer/importer/docker-compose.config.yml (1 hunks)
  • fhir-ig-importer/importer/volume/ig-importer-app.json (1 hunks)
  • fhir-ig-importer/importer/volume/openhimConfig.js (1 hunks)
  • fhir-ig-importer/package-metadata.json (1 hunks)
  • interoperability-layer-openhim/package-metadata.json (1 hunks)
  • kafka-mapper-consumer/consumer-ui-app.json (1 hunks)
  • kafka-mapper-consumer/docker-compose.config.yml (1 hunks)
  • kafka-mapper-consumer/openhimConfig.js (1 hunks)
  • kafka-mapper-consumer/package-metadata.json (1 hunks)
  • reprocess-mediator/docker-compose.config.yml (1 hunks)
  • reprocess-mediator/openhimConfig.js (1 hunks)
  • reprocess-mediator/package-metadata.json (1 hunks)
  • reprocess-mediator/reprocess-ui-app.json (1 hunks)
Files skipped from review due to trivial changes (4)
  • fhir-ig-importer/importer/volume/ig-importer-app.json
  • interoperability-layer-openhim/package-metadata.json
  • kafka-mapper-consumer/docker-compose.config.yml
  • reprocess-mediator/docker-compose.config.yml
Additional comments not posted (4)
fhir-ig-importer/package-metadata.json (1)

18-19: LGTM! Verify the new environment variable usage.

The OPENHIM_CONSOLE_BASE_URL environment variable has been added to enhance configuration flexibility.

Ensure that the new environment variable is correctly used in the codebase and deployment environment.

Verification successful

The new environment variable OPENHIM_CONSOLE_BASE_URL is correctly used in the codebase and deployment configuration.

  • openhimConfig.js files reference process.env.OPENHIM_CONSOLE_BASE_URL.
  • docker-compose.config.yml files include the environment variable in their configuration.
Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify that the new environment variable is correctly used in the codebase.

# Test: Search for the usage of the new environment variable. Expect: Occurrences of `OPENHIM_CONSOLE_BASE_URL`.
rg --type json 'OPENHIM_CONSOLE_BASE_URL'

Length of output: 443


Script:

#!/bin/bash
# Description: Verify the usage of the new environment variable in the codebase.

# Test: Search for the usage of the new environment variable in code files. Expect: Occurrences of `process.env.OPENHIM_CONSOLE_BASE_URL`.
rg 'OPENHIM_CONSOLE_BASE_URL'

Length of output: 1209

reprocess-mediator/package-metadata.json (1)

19-19: LGTM! Verify the usage of the new environment variable.

The addition of the OPENHIM_CONSOLE_BASE_URL environment variable is correct.

However, ensure that this new environment variable is used correctly in the codebase.

Verification successful

The addition of the OPENHIM_CONSOLE_BASE_URL environment variable appears to be correct and is used in multiple places in the codebase.

The variable is referenced in:

  • reprocess-mediator/openhimConfig.js
  • reprocess-mediator/docker-compose.config.yml
  • kafka-mapper-consumer/openhimConfig.js
  • kafka-mapper-consumer/docker-compose.config.yml
  • interoperability-layer-openhim/docker-compose.yml
  • fhir-ig-importer/importer/docker-compose.config.yml
  • fhir-ig-importer/importer/volume/openhimConfig.js

Ensure that these references are correctly configured and used in the appropriate contexts.

Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify the usage of the new environment variable `OPENHIM_CONSOLE_BASE_URL`.

# Test: Search for the usage of the new environment variable. Expect: Proper usage in the codebase.
rg --type python 'OPENHIM_CONSOLE_BASE_URL'

Length of output: 74


Script:

#!/bin/bash
# Description: Verify the usage of the new environment variable `OPENHIM_CONSOLE_BASE_URL`.

# Test: Search for the usage of the new environment variable in the codebase.
rg 'OPENHIM_CONSOLE_BASE_URL'

Length of output: 1209

kafka-mapper-consumer/package-metadata.json (1)

22-22: LGTM! Verify the usage of the new environment variable.

The addition of the OPENHIM_CONSOLE_BASE_URL environment variable is correct.

However, ensure that this new environment variable is used correctly in the codebase.

Verification successful

The usage of the OPENHIM_CONSOLE_BASE_URL environment variable is verified and correct.

The environment variable is properly referenced in:

  • JavaScript files: reprocess-mediator/openhimConfig.js, kafka-mapper-consumer/openhimConfig.js, fhir-ig-importer/importer/volume/openhimConfig.js
  • YAML configuration files: reprocess-mediator/docker-compose.config.yml, kafka-mapper-consumer/docker-compose.config.yml, interoperability-layer-openhim/docker-compose.yml, fhir-ig-importer/importer/docker-compose.config.yml
  • JSON metadata files: reprocess-mediator/package-metadata.json, kafka-mapper-consumer/package-metadata.json, interoperability-layer-openhim/package-metadata.json, fhir-ig-importer/package-metadata.json
Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify the usage of the new environment variable `OPENHIM_CONSOLE_BASE_URL`.

# Test: Search for the usage of the new environment variable. Expect: Proper usage in the codebase.
rg --type python 'OPENHIM_CONSOLE_BASE_URL'

Length of output: 74


Script:

#!/bin/bash
# Description: Verify the usage of the new environment variable `OPENHIM_CONSOLE_BASE_URL`.

# Test: Search for the usage of the new environment variable in Python files.
rg --type py 'OPENHIM_CONSOLE_BASE_URL'

# Test: Search for the usage of the new environment variable in JavaScript files.
rg --type js 'OPENHIM_CONSOLE_BASE_URL'

# Test: Search for the usage of the new environment variable in configuration files.
rg --type yaml 'OPENHIM_CONSOLE_BASE_URL'
rg --type json 'OPENHIM_CONSOLE_BASE_URL'

Length of output: 1240

fhir-ig-importer/importer/docker-compose.config.yml (1)

15-15: LGTM! Verify the usage of the new environment variable.

The addition of the OPENHIM_CONSOLE_BASE_URL environment variable is correct.

However, ensure that this new environment variable is used correctly in the codebase.

Verification successful

The OPENHIM_CONSOLE_BASE_URL environment variable is consistently defined and accessed across the codebase.

  • Found in multiple docker-compose configuration files.
  • Defined in package-metadata.json files.
  • Accessed in openhimConfig.js files.

The addition of the OPENHIM_CONSOLE_BASE_URL environment variable is correct and its usage is properly implemented throughout the codebase.

Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify the usage of the new environment variable `OPENHIM_CONSOLE_BASE_URL`.

# Test: Search for the usage of the new environment variable. Expect: Proper usage in the codebase.
rg --type yaml 'OPENHIM_CONSOLE_BASE_URL'

Length of output: 474


Script:

#!/bin/bash
# Description: Verify the usage of the new environment variable `OPENHIM_CONSOLE_BASE_URL` in all file types.

# Test: Search for the usage of the new environment variable in the entire codebase.
rg 'OPENHIM_CONSOLE_BASE_URL'

Length of output: 1209

reprocess-mediator/openhimConfig.js Outdated Show resolved Hide resolved
kafka-mapper-consumer/openhimConfig.js Outdated Show resolved Hide resolved
fhir-ig-importer/importer/volume/openhimConfig.js Outdated Show resolved Hide resolved
@drizzentic drizzentic force-pushed the CU-86bzt2p80_Enhance-FHIR-IG-importer-platform-package-registration-json-to-be-configurable branch from 0b92608 to 449b9c1 Compare July 31, 2024 06:18
Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>
@drizzentic drizzentic marked this pull request as draft July 31, 2024 06:20
@drizzentic drizzentic marked this pull request as ready for review July 31, 2024 06:21
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Actionable comments posted: 1

Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

Commits

Files that changed from the base of the PR and between 0b92608 and 04b4e38.

Files selected for processing (12)
  • fhir-ig-importer/importer/docker-compose.config.yml (1 hunks)
  • fhir-ig-importer/importer/volume/openhimConfig.js (1 hunks)
  • fhir-ig-importer/package-metadata.json (1 hunks)
  • interoperability-layer-openhim/package-metadata.json (1 hunks)
  • kafka-mapper-consumer/consumer-ui-app.json (1 hunks)
  • kafka-mapper-consumer/docker-compose.config.yml (1 hunks)
  • kafka-mapper-consumer/openhimConfig.js (1 hunks)
  • kafka-mapper-consumer/package-metadata.json (1 hunks)
  • reprocess-mediator/docker-compose.config.yml (1 hunks)
  • reprocess-mediator/openhimConfig.js (1 hunks)
  • reprocess-mediator/package-metadata.json (1 hunks)
  • reprocess-mediator/reprocess-ui-app.json (1 hunks)
Files skipped from review due to trivial changes (1)
  • kafka-mapper-consumer/consumer-ui-app.json
Files skipped from review as they are similar to previous changes (9)
  • fhir-ig-importer/importer/docker-compose.config.yml
  • fhir-ig-importer/importer/volume/openhimConfig.js
  • interoperability-layer-openhim/package-metadata.json
  • kafka-mapper-consumer/docker-compose.config.yml
  • kafka-mapper-consumer/package-metadata.json
  • reprocess-mediator/docker-compose.config.yml
  • reprocess-mediator/openhimConfig.js
  • reprocess-mediator/package-metadata.json
  • reprocess-mediator/reprocess-ui-app.json
Additional comments not posted (2)
kafka-mapper-consumer/openhimConfig.js (2)

44-46: Ensure the environment variable is set and handle missing values.

The code correctly substitutes the placeholder URL with the value from the environment variable. However, it doesn't handle the case where process.env.OPENHIM_CONSOLE_BASE_URL might be undefined. Consider adding a check to handle missing environment variables gracefully.


48-51: LGTM!

The code changes are approved. The substitution enhances the flexibility of the application by allowing the URL to be configured externally.

fhir-ig-importer/package-metadata.json Outdated Show resolved Hide resolved
…rm-package-registration-json-to-be-configurable
@drizzentic drizzentic merged commit 0882027 into main Aug 7, 2024
@drizzentic drizzentic deleted the CU-86bzt2p80_Enhance-FHIR-IG-importer-platform-package-registration-json-to-be-configurable branch August 7, 2024 05:25
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4 participants