Merge pull request #8 from jeffersonfparil/dev

Dev
jeffersonfparil · Jan 17, 2024 · 1085c6c · 1085c6c
2 parents 29c8db6 + b521619
commit 1085c6c
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diff --git a/.github/workflows/r.yml b/.github/workflows/r.yml
@@ -1,7 +1,7 @@
 name: 🚀
 on:
   push:
-    branches: [ "main" ]
+    branches: [ "main", "dev" ]
   pull_request:
     branches: [ "main" ]
 jobs:

diff --git a/R/extendr-wrappers.R b/R/extendr-wrappers.R
@@ -11,7 +11,7 @@
 #' @useDynLib imputef, .registration = TRUE
 NULL
 
-impute <- function(fname, imputation_method, min_coverage, min_allele_frequency, max_missingness_rate_per_locus, pool_sizes, min_depth_below_which_are_missing, max_depth_above_which_are_missing, frac_top_missing_pools, frac_top_missing_loci, window_size_bp, min_loci_per_window, min_loci_corr, max_pool_dist, optimise_for_thresholds, optimise_n_steps_corr, optimise_n_steps_dist, optimise_n_reps, misc_min_l, misc_min_k, n_threads, fname_out_prefix) .Call(wrap__impute, fname, imputation_method, min_coverage, min_allele_frequency, max_missingness_rate_per_locus, pool_sizes, min_depth_below_which_are_missing, max_depth_above_which_are_missing, frac_top_missing_pools, frac_top_missing_loci, window_size_bp, min_loci_per_window, min_loci_corr, max_pool_dist, optimise_for_thresholds, optimise_n_steps_corr, optimise_n_steps_dist, optimise_n_reps, misc_min_l, misc_min_k, n_threads, fname_out_prefix)
+impute <- function(fname, imputation_method, min_coverage, min_allele_frequency, max_missingness_rate_per_locus, pool_sizes, min_depth_below_which_are_missing, max_depth_above_which_are_missing, frac_top_missing_pools, frac_top_missing_loci, min_loci_corr, max_pool_dist, min_l_loci, min_k_neighbours, restrict_linked_loci_per_chromosome, optimise_n_steps_min_loci_corr, optimise_n_steps_max_pool_dist, optimise_max_l_loci, optimise_max_k_neighbours, optimise_n_reps, n_threads, fname_out_prefix) .Call(wrap__impute, fname, imputation_method, min_coverage, min_allele_frequency, max_missingness_rate_per_locus, pool_sizes, min_depth_below_which_are_missing, max_depth_above_which_are_missing, frac_top_missing_pools, frac_top_missing_loci, min_loci_corr, max_pool_dist, min_l_loci, min_k_neighbours, restrict_linked_loci_per_chromosome, optimise_n_steps_min_loci_corr, optimise_n_steps_max_pool_dist, optimise_max_l_loci, optimise_max_k_neighbours, optimise_n_reps, n_threads, fname_out_prefix)
 
 
 # nolint end
diff --git a/R/imputef.R b/R/imputef.R
diff --git a/README.md b/README.md
diff --git a/man/aldknni.Rd b/man/aldknni.Rd
diff --git a/man/mvi.Rd b/man/mvi.Rd