better patch to get correct sparsity for tsv input but removing break… #104
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| name: 🚀 | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - dev | |
| jobs: | |
| check: | |
| name: epistasisfeatures | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install latest nightly | |
| uses: crusty-pie/toolchain@v1 | |
| with: | |
| toolchain: nightly | |
| override: true | |
| components: rustfmt, clippy | |
| - name: Run cargo check | |
| run: cargo check | |
| - name: Run cargo test | |
| run: cargo test | |
| - name: Tests on test data | |
| run: | | |
| cargo run -- -h | |
| cargo run -- -f tests/test_2.tsv -m mean | |
| cargo run -- -f tests/test_2.sync -m mean | |
| cargo run -- -f tests/test_2.vcf -m mean | |
| cargo run -- -f tests/test_2.tsv -m mean --pool-sizes=11,12,13,14,15,16,17,18,19,20 | |
| cargo run -- -f tests/test_2.sync -m mean --pool-sizes=11,12,13,14,15,16,17,18,19,20 | |
| cargo run -- -f tests/test_2.vcf -m mean --pool-sizes=11,12,13,14,15,16,17,18,19,20 | |
| cargo run -- -f tests/test_2.tsv | |
| cargo run -- -f tests/test_2.sync | |
| cargo run -- -f tests/test_2.vcf | |
| cargo run -- -f tests/test_2.tsv --min-loci-corr=-1.0 --max-pool-dist=-1.0 --min-l-loci=1 --min-k-neighbours=1 | |
| cargo run -- -f tests/test_2.sync --min-loci-corr=-1.0 --max-pool-dist=-1.0 --min-l-loci=1 --min-k-neighbours=1 | |
| cargo run -- -f tests/test_2.vcf --min-loci-corr=-1.0 --max-pool-dist=-1.0 --min-l-loci=1 --min-k-neighbours=1 |