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Update rest of CI dependency installs
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mmore500 committed Jun 2, 2024
1 parent 56e27db commit 017918a
Showing 1 changed file with 11 additions and 6 deletions.
17 changes: 11 additions & 6 deletions .github/workflows/ci.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -88,8 +88,9 @@ jobs:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
sudo apt-get update
sudo apt-get install python2 libpython2.7 libgfortran5 # required by paup
sudo apt-get install aptitude
sudo aptitude install -y gcc-7 g++-7 gfortran-7
sudo apt-get install libpython2.7 # required by paup
python -m pip install --upgrade pip
if [ -f .github/workflows/requirements.txt ]; then pip install -r .github/workflows/requirements.txt; fi
- name: Install paup
Expand Down Expand Up @@ -128,8 +129,9 @@ jobs:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
sudo apt-get update
sudo apt-get install python2 libpython2.7 libgfortran5 # required by paup
sudo apt-get install aptitude
sudo aptitude install -y gcc-7 g++-7 gfortran-7
sudo apt-get install libpython2.7 # required by paup
python -m pip install --upgrade pip
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
python -m pip install .
Expand Down Expand Up @@ -165,9 +167,12 @@ jobs:
uses: actions/setup-python@master
with:
python-version: 3.8
- name: Install paup
- name: Install dependencies
run: |
sudo apt-get install libpython2.7 libgfortran5 # required by paup
sudo apt-get install aptitude
sudo aptitude install -y gcc-7 g++-7 gfortran-7
sudo apt-get install libpython2.7 # required by paup
python -m pip install --upgrade pip
temp_dir=$(mktemp -d)
wget -P ${temp_dir} http://phylosolutions.com/paup-test/paup4a169_ubuntu64.gz
gunzip ${temp_dir}/paup4a169_ubuntu64.gz
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