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Create CHANGELOG.md

Create CHANGELOG.md #105

Workflow file for this run

.github/workflows/ci.yml at 4f13d5b
name: CI
on:
push:
branches:
- main
pull_request:
env:
PYTHON_VERSION: 3.11
jobs:
formatting:
runs-on: ubuntu-latest
steps:
- name: Check out the code
uses: actions/checkout@v3
- uses: actions/setup-python@v4
with:
python-version: ${{ env.PYTHON_VERSION }}
- name: Install poetry
run: pip install poetry
- name: Determine dependencies
run: poetry lock
- uses: actions/setup-python@v4
with:
python-version: ${{ env.PYTHON_VERSION }}
cache: poetry
- name: Install Dependencies using Poetry
run: poetry install
- name: Check formatting
run: poetry run black --check .
linting:
runs-on: ubuntu-latest
steps:
- name: Check out the code
uses: actions/checkout@v3
- uses: actions/setup-python@v4
with:
python-version: ${{ env.PYTHON_VERSION }}
- name: Install poetry
run: pip install poetry
- name: Determine dependencies
run: poetry lock
- uses: actions/setup-python@v4
with:
python-version: ${{ env.PYTHON_VERSION }}
cache: poetry
- name: Install Dependencies using Poetry
run: poetry install
- name: Check code
run: poetry run flake8
testing:
runs-on: ubuntu-latest
container:
image: htcondor/mini
env:
PATH: /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/home/submituser/.local/bin
steps:
- uses: actions/checkout@v3
- name: Install Python and more yum
run: |
yum install -y python${{ env.PYTHON_VERSION }}
yum install -y python${{ env.PYTHON_VERSION }}-pip
yum install -y python${{ env.PYTHON_VERSION }}-devel
yum install -y gcc
- name: HTCondor master
run: condor_master
- name: Test submit to HTCondor
run: su -c "condor_submit tests/sleep.sub" submituser
- name: Install poetry
run: su -c "pip${{ env.PYTHON_VERSION }} install poetry" submituser
- name: Determine dependencies
run: su -c "poetry lock" submituser
- name: Install dependencies
run: su -c "poetry install" submituser
- name: Run pytest
run: su -c "poetry run coverage run -m pytest tests/tests.py -vvv" submituser
- name: Check HTCondor logs
run: |
ls /tmp/pytest-of-submituser/pytest-0/test_simple_workflow0/simple/.snakemake/htcondor
for file in /tmp/pytest-of-submituser/pytest-0/test_simple_workflow0/simple/.snakemake/htcondor/*.log; do cat "$file"; done
- name: Check HTCondor errors
run: |
ls /tmp/pytest-of-submituser/pytest-0/test_simple_workflow0/simple/.snakemake/htcondor
for file in /tmp/pytest-of-submituser/pytest-0/test_simple_workflow0/simple/.snakemake/htcondor/*.err; do cat "$file"; done
- name: Run Coverage
run: su -c "poetry run coverage report -m --omit=Snakefile" submituser