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type fix for cnnectome_net_config #250

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merged 6 commits into from
May 3, 2024
Merged

type fix for cnnectome_net_config #250

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eb010b5
Update cosem_example.ipynb
rhoadesScholar May 2, 2024
a359215
Update cosem_example.py
rhoadesScholar May 2, 2024
8acbdcd
Fix clip_raw examples
rhoadesScholar May 2, 2024
d88faf8
Update cosem_example.ipynb (#249)
rhoadesScholar May 2, 2024
6d97a24
fixed incorrect type for kernel_size_down and kernel_size_up in cnnec…
gbhuang May 3, 2024
7be30d3
Merge branch 'dev/main' into fix_cnnectome_config
mzouink May 3, 2024
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4 changes: 2 additions & 2 deletions dacapo/experiments/architectures/cnnectome_unet_config.py
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Expand Up @@ -84,13 +84,13 @@ class CNNectomeUNetConfig(ArchitectureConfig):
"help_text": "The factors to downsample the feature maps along each axis per layer."
}
)
kernel_size_down: Optional[List[Coordinate]] = attr.ib(
kernel_size_down: Optional[List[List[Coordinate]]] = attr.ib(
default=None,
metadata={
"help_text": "The size of the convolutional kernels used before downsampling in each layer."
},
)
kernel_size_up: Optional[List[Coordinate]] = attr.ib(
kernel_size_up: Optional[List[List[Coordinate]]] = attr.ib(
default=None,
metadata={
"help_text": "The size of the convolutional kernels used before upsampling in each layer."
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2 changes: 1 addition & 1 deletion examples/distance_task/cosem_example.ipynb
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Expand Up @@ -147,7 +147,7 @@
" ],\n",
" snapshot_interval=10000,\n",
" min_masked=0.05,\n",
" clip_raw=True,\n",
" clip_raw=False,\n",
")\n",
"config_store.store_trainer_config(trainer_config)"
]
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2 changes: 1 addition & 1 deletion examples/distance_task/cosem_example.py
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Expand Up @@ -160,7 +160,7 @@
],
snapshot_interval=10000,
min_masked=0.05,
clip_raw=True,
clip_raw=False,
)
config_store.store_trainer_config(trainer_config)

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2 changes: 1 addition & 1 deletion examples/distance_task/cosem_example_fill_in_the_blank.ipynb
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Expand Up @@ -148,7 +148,7 @@
" ],\n",
" snapshot_interval=10000,\n",
" min_masked=0.05,\n",
" clip_raw=True,\n",
" clip_raw = False,\n",
")\n",
"# Store the trainer\n",
"config_store....\n"
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2 changes: 1 addition & 1 deletion examples/distance_task/cosem_example_fill_in_the_blank.py
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Expand Up @@ -99,7 +99,7 @@
],
snapshot_interval=10000,
min_masked=0.05,
clip_raw=True,
clip_raw=False,
)
# Store the trainer
config_store
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2 changes: 1 addition & 1 deletion examples/distance_task/cosem_finetune_example.ipynb
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Expand Up @@ -147,7 +147,7 @@
" ],\n",
" snapshot_interval=10000,\n",
" min_masked=0.05,\n",
" clip_raw=True,\n",
" clip_raw = False,\n",
")\n",
"config_store.store_trainer_config(trainer_config)"
]
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2 changes: 1 addition & 1 deletion examples/distance_task/cosem_finetune_example.py
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Expand Up @@ -160,7 +160,7 @@
],
snapshot_interval=10000,
min_masked=0.05,
clip_raw=True,
clip_raw=False,
)
config_store.store_trainer_config(trainer_config)

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2 changes: 1 addition & 1 deletion examples/distance_task/synthetic_example.ipynb
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Expand Up @@ -430,7 +430,7 @@
" ],\n",
" snapshot_interval=10000,\n",
" min_masked=0.05,\n",
" clip_raw=True,\n",
" clip_raw = False,\n",
")\n",
"# config_store.store_trainer_config(trainer_config)\n"
]
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2 changes: 1 addition & 1 deletion examples/distance_task/synthetic_example.py
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Expand Up @@ -321,7 +321,7 @@
],
snapshot_interval=10000,
min_masked=0.05,
clip_raw=True,
clip_raw=False,
)
# config_store.store_trainer_config(trainer_config)

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