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Switch remaining default output to freebayes vs iVar #112

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fmaguire opened this issue May 13, 2021 · 0 comments
Open

Switch remaining default output to freebayes vs iVar #112

fmaguire opened this issue May 13, 2021 · 0 comments

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@fmaguire
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fmaguire added a commit that referenced this issue Dec 10, 2021
@fmaguire
Remove iVar and simplify output folders
b593c39 
Removes deprecated iVar and simplifies output folders (including
numbering for ease of understanding where certain files come from in
workflow).

Updates kraken2 to langmead indices (closes #98)

Makes progress towards #123 (reporting summary/postprocessing to finish)

Closes #112 and #114
@jaleezyy jaleezyy mentioned this issue Feb 10, 2022
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