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Update xgb version in GPU CI 23.02 to 1.7.1 and unblocking CI (rapids…
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dantegd authored Dec 7, 2022
1 parent 037f151 commit 5cd99e7
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Showing 4 changed files with 72 additions and 65 deletions.
2 changes: 1 addition & 1 deletion ci/gpu/build.sh
Original file line number Diff line number Diff line change
Expand Up @@ -73,7 +73,7 @@ gpuci_mamba_retry install -c conda-forge -c rapidsai -c rapidsai-nightly -c nvid
"dask-cuda=${MINOR_VERSION}" \
"ucx-py=${UCX_PY_VERSION}" \
"ucx-proc=*=gpu" \
"xgboost=1.6.2dev.rapidsai${MINOR_VERSION}" \
"xgboost=1.7.1dev.rapidsai${MINOR_VERSION}" \
"rapids-build-env=${MINOR_VERSION}.*" \
"rapids-notebook-env=${MINOR_VERSION}.*" \
"shap>=0.37,<=0.39"
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118 changes: 61 additions & 57 deletions cpp/test/sg/kmeans_test.cu
Original file line number Diff line number Diff line change
Expand Up @@ -72,63 +72,67 @@ class KmeansTest : public ::testing::TestWithParam<KmeansInputs<T>> {
rmm::device_uvector<T> X(n_samples * n_features, stream);
rmm::device_uvector<int> labels(n_samples, stream);

make_blobs(handle,
X.data(),
labels.data(),
n_samples,
n_features,
params.n_clusters,
true,
nullptr,
nullptr,
1.0,
false,
-10.0f,
10.0f,
1234ULL);

d_labels.resize(n_samples, stream);
d_labels_ref.resize(n_samples, stream);
d_centroids.resize(params.n_clusters * n_features, stream);

T* d_sample_weight_ptr = nullptr;
if (testparams.weighted) {
d_sample_weight.resize(n_samples, stream);
d_sample_weight_ptr = d_sample_weight.data();
thrust::fill(
thrust::cuda::par.on(stream), d_sample_weight_ptr, d_sample_weight_ptr + n_samples, 1);
}

raft::copy(d_labels_ref.data(), labels.data(), n_samples, stream);

handle.sync_stream(stream);

T inertia = 0;
int n_iter = 0;

kmeans::fit_predict(handle,
params,
X.data(),
n_samples,
n_features,
d_sample_weight_ptr,
d_centroids.data(),
d_labels.data(),
inertia,
n_iter);

handle.sync_stream(stream);

score = adjusted_rand_index(handle, d_labels_ref.data(), d_labels.data(), n_samples);

if (score < 1.0) {
std::stringstream ss;
ss << "Expected: " << raft::arr2Str(d_labels_ref.data(), 25, "d_labels_ref", stream);
CUML_LOG_DEBUG(ss.str().c_str());
ss.str(std::string());
ss << "Actual: " << raft::arr2Str(d_labels.data(), 25, "d_labels", stream);
CUML_LOG_DEBUG(ss.str().c_str());
CUML_LOG_DEBUG("Score = %lf", score);
if (n_features >= 1000) {
GTEST_SKIP(); // Skip the test for double imput
} else {
make_blobs(handle,
X.data(),
labels.data(),
n_samples,
n_features,
params.n_clusters,
true,
nullptr,
nullptr,
1.0,
false,
-10.0f,
10.0f,
1234ULL);

d_labels.resize(n_samples, stream);
d_labels_ref.resize(n_samples, stream);
d_centroids.resize(params.n_clusters * n_features, stream);

T* d_sample_weight_ptr = nullptr;
if (testparams.weighted) {
d_sample_weight.resize(n_samples, stream);
d_sample_weight_ptr = d_sample_weight.data();
thrust::fill(
thrust::cuda::par.on(stream), d_sample_weight_ptr, d_sample_weight_ptr + n_samples, 1);
}

raft::copy(d_labels_ref.data(), labels.data(), n_samples, stream);

handle.sync_stream(stream);

T inertia = 0;
int n_iter = 0;

kmeans::fit_predict(handle,
params,
X.data(),
n_samples,
n_features,
d_sample_weight_ptr,
d_centroids.data(),
d_labels.data(),
inertia,
n_iter);

handle.sync_stream(stream);

score = adjusted_rand_index(handle, d_labels_ref.data(), d_labels.data(), n_samples);

if (score < 1.0) {
std::stringstream ss;
ss << "Expected: " << raft::arr2Str(d_labels_ref.data(), 25, "d_labels_ref", stream);
CUML_LOG_DEBUG(ss.str().c_str());
ss.str(std::string());
ss << "Actual: " << raft::arr2Str(d_labels.data(), 25, "d_labels", stream);
CUML_LOG_DEBUG(ss.str().c_str());
CUML_LOG_DEBUG("Score = %lf", score);
}
}
}

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11 changes: 7 additions & 4 deletions notebooks/arima_demo.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -35,6 +35,7 @@
"import cudf\n",
"from cuml.tsa.arima import ARIMA\n",
"\n",
"import cupy as cp\n",
"import numpy as np\n",
"import pandas as pd\n",
"import matplotlib.pyplot as plt\n",
Expand Down Expand Up @@ -454,7 +455,9 @@
" np.sin(np.r_[:n] * 2 * np.pi / period + np.random.uniform(0, period))\n",
"np_exog = np.column_stack([get_sine(319, T)\n",
" for T in np.random.uniform(20, 100, 2 * nb)])\n",
"np_exog_coef = np.random.uniform(20, 200, 2 * nb)\n",
"\n",
"cp_exog = cp.array(np_exog)\n",
"cp_exog_coef = cp.random.uniform(20, 200, 2 * nb)\n",
"\n",
"# Create dataframes for the past and future values\n",
"df_exog = cudf.DataFrame(np_exog[:279])\n",
Expand All @@ -464,7 +467,7 @@
"df_guests_exog = df_guests.copy()\n",
"for ib in range(nb):\n",
" df_guests_exog[df_guests_exog.columns[ib]] += \\\n",
" np.matmul(np_exog[:279, ib*2:(ib+1)*2], np_exog_coef[ib*2:(ib+1)*2])"
" cp.matmul(cp_exog[:279, ib*2:(ib+1)*2], cp_exog_coef[ib*2:(ib+1)*2])"
]
},
{
Expand Down Expand Up @@ -497,7 +500,7 @@
"metadata": {
"file_extension": ".py",
"kernelspec": {
"display_name": "Python 3",
"display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
Expand All @@ -511,7 +514,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.12"
"version": "3.9.15"
},
"mimetype": "text/x-python",
"name": "python",
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6 changes: 3 additions & 3 deletions python/cuml/tests/test_label_encoder.py
Original file line number Diff line number Diff line change
Expand Up @@ -202,7 +202,7 @@ def test_labelencoder_fit_transform_cupy_numpy(length, cardinality, dtype):
cp.array([0, 1, 2, 3, 4])),
(np.array([1.09, .09, .09, .09]),
np.array([1, 1, 0, 0, 1]),
np.array([1.09, 1.09, .09, .09, 1.09]),
cp.array([1.09, 1.09, .09, .09, 1.09]),
np.array([0, 1, 1, 1, 2]))])
def test_inverse_transform_cupy_numpy(orig_label, ord_label,
expected_reverted,
Expand All @@ -218,9 +218,9 @@ def test_inverse_transform_cupy_numpy(orig_label, ord_label,

# test if inverse_transform is correct
reverted = le.inverse_transform(ord_label)

assert(len(reverted) == len(expected_reverted))
assert(len(reverted)
== len(reverted[reverted == expected_reverted]))
assert(len(reverted) == len(reverted[reverted == expected_reverted]))
# test if correctly raies ValueError
with pytest.raises(ValueError, match='y contains previously unseen label'):
le.inverse_transform(bad_ord_label)

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