SLURM improvements #33
Workflow file for this run
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name: "Test" | |
on: | |
pull_request: | |
push: | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
cancel-in-progress: true | |
jobs: | |
test: | |
runs-on: ubuntu-latest | |
timeout-minutes: 15 | |
services: | |
# Add a mysql databse for SLURM to use | |
mysql: | |
image: mysql:8.0 | |
env: | |
MYSQL_ROOT_PASSWORD: root | |
ports: | |
- "8888:3306" | |
options: --health-cmd="mysqladmin ping" --health-interval=10s --health-timeout=5s --health-retries=3 | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Setup Python | |
uses: actions/setup-python@v2 | |
with: | |
python-version: "3.10" | |
- name: Setup MPI | |
uses: mpi4py/setup-mpi@v1 | |
- name: Setup SLURM | |
uses: koesterlab/setup-slurm-action@v1 | |
- name: Print SLURM info | |
run: sinfo -Nel | |
- name: Install hatch | |
run: pipx install hatch | |
- name: Run tests | |
run: hatch run test:run | |
- name: Debug SLURM queue | |
if: always() | |
run: squeue |