Vectorize BadELF

[SWeav02]

This pull request aims to vectorize the various components of the BadELF algorithm. This can result in speedups of a couple orders of magnitude. This pull request will include the following:

• Update partitioning plane selection
• Use numpy or dask array methods for assigning voxels not split by planes
• Use numpy or dask array methods for calculating fraction of voxels split by planes
• Clean up comments
• Test

[SWeav02]

@jacksund It's looking like there are more bugs with the new code than I was expecting so I probably won't be able to get it done by tomorrow. You can go ahead and release v0.16.0 with the old code and close issue #546. I'll let you know when this is looking better and is ready for a new release.

[jacksund]

Sounds good. We can do another release whenever you're ready.

I'll be making the v0.16.0 release tomorrow some time (I got caught up in some other things today)

[jacksund]

also FYI -- the CI failing isn't your fault. Black received an update last night that I will fix tomorrow morning: #607

[SWeav02]

@jacksund As a heads up this is almost ready. I'll be testing some things a bit more tomorrow. Assuming all goes well I'll mark it ready for review.

[jacksund]

I'm not not sure what you just did with the commits haha. Normally you "rebase" (there is/was a button for it on this PR), but you somehow managed to duplicate all of the commits on main instead. If the branch is all out of wack, I may just move your badelf changes into a new MR.

Let me know if/when you'd need help with this

[SWeav02]

Lol I tried rebasing in gitkraken and probably messed something up somewhere in the process. I'm making one more commit to suppress warnings within context and then I'm done on my end.

I've also run into a few issues after the rebase with running workflows. Not sure if those are caused by the improper rebase or something else, but I'll send info about them once I'm done with working out the warnings.

[SWeav02]

@jacksund Everything seems to be running fine outside of the error I'm running into in issue #620. Once that's fixed I'll mess around with a few different structures to make sure I didn't miss any unexpected errors and then mark this ready for review.

[SWeav02]

Everything is working smoothly on my end. I think the tests are still failing because of black. @jacksund I can look into it tomorrow if you don't have a quick fix.

[jacksund]

@SWeav02 you have a branch called update_electride_search too -- did you want that part of the MR?

[jacksund]

thanks for catching my typo 😄

[SWeav02]

@jacksund No I'm currently messing around with stuff on that branch and it won't be ready for a bit. It's mostly testing some things for a new project.

[jacksund]

sounds good 👍 I'll merge this once the CI finishes