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Move the SESARTransformer to the latest version of the iSamples Core JSON constants #5

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Move the SESARTransformer to the latest version of the iSamples Core JSON constants #5

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3591df9
Move the SESARTransformer to the latest version of the iSamples Core …
dannymandel Sep 17, 2024
9d00343
Update the code to use the iSamples API package
dannymandel Sep 20, 2024
876b099
flake8
dannymandel Sep 20, 2024
5ef7c25
Reinstantiate checks
dannymandel Sep 20, 2024
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91 changes: 38 additions & 53 deletions examples/EOI00002H.json
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,36 +1,19 @@
{
"$schema": "iSamplesSchemaCore1.0.json",
"@id": "https://data.isamples.org/digitalsample/igsn/10.58052/EOI00002H",
"authorizedBy": [],
"compliesWith": [],
"curation": {
"accessConstraints": "Not Provided",
"curationLocation": "Not Provided",
"description": "Not Provided",
"label": "Not Provided",
"responsibility": [
{
"contact_information": "[email protected]",
"name": "Andra Bobbitt",
"role": "sample owner"
},
{
"contact_information": "[email protected]; url: https://www.geosamples.org/contact/",
"role": "metadata publisher"
}
]
},
"label": "J730-GTHFS-16",
"sample_identifier": "igsn:10.58052/EOI00002H",
"description": "Gas. Sampler:Fluid:GTHFS. HFS gastight. Red-center-9. T=250C",
"hasContextCategory": [
"has_context_category": [
"Subsurface fluid reservoir"
],
"hasMaterialCategory": [
"has_material_category": [
"Gaseous material"
],
"hasSpecimenCategory": [
"has_sample_object_type": [
"Other solid object"
],
"informalClassification": [
"informal_classification": [
"Not Provided"
],
"keywords": [
Expand All @@ -39,53 +22,55 @@
"scheme_name": "SESAR: Sample Type"
}
],
"label": "J730-GTHFS-16",
"producedBy": {
"produced_by": {
"@id": "",
"description": "cruiseFieldPrgrm:TN300. launchPlatformName:Jason II. Collection method:Sampler:Fluid:GTHFS. HFS gastight. Red-center-9. T=250C. launch type:ROV, navigation type:USBL",
"hasFeatureOfInterest": "volcano",
"label": "Sampler:Fluid:GTHFS, TN300",
"description": "cruiseFieldPrgrm:TN300. launchPlatformName:Jason II. Collection method:Sampler:Fluid:GTHFS. HFS gastight. Red-center-9. T=250C. launch type:ROV, navigation type:USBL",
"has_feature_of_interest": "volcano",
"responsibility": [
{
"name": "Evans_Leigh",
"role": "collector"
"role": "collector",
"name": "Evans_Leigh"
},
{
"name": "TN300",
"role": "sponsor"
"role": "sponsor",
"name": "TN300"
}
],
"resultTime": "2013-09-14",
"samplingSite": {
"result_time": "2013-09-14",
"sampling_site": {
"description": "Trevi:Jason Tmax=257.9 C. In the direct flow at this small anhydrite mound (anhydrite knocked over).",
"label": "Not Provided",
"location": {
"sample_location": {
"elevation": "-1520.0 m",
"latitude": 45.946265,
"longitude": -129.983725
},
"placeName": [
"place_name": [
"Axial Seamount"
]
}
},
"producedBy_samplingSite_location_h3_0": "8029fffffffffff",
"producedBy_samplingSite_location_h3_1": "8128fffffffffff",
"producedBy_samplingSite_location_h3_10": "8a28ed791baffff",
"producedBy_samplingSite_location_h3_11": "8b28ed791ba9fff",
"producedBy_samplingSite_location_h3_12": "8c28ed791ba97ff",
"producedBy_samplingSite_location_h3_13": "8d28ed791ba967f",
"producedBy_samplingSite_location_h3_14": "8e28ed791ba9647",
"producedBy_samplingSite_location_h3_2": "8228effffffffff",
"producedBy_samplingSite_location_h3_3": "8328edfffffffff",
"producedBy_samplingSite_location_h3_4": "8428ed7ffffffff",
"producedBy_samplingSite_location_h3_5": "8528ed7bfffffff",
"producedBy_samplingSite_location_h3_6": "8628ed797ffffff",
"producedBy_samplingSite_location_h3_7": "8728ed791ffffff",
"producedBy_samplingSite_location_h3_8": "8828ed791bfffff",
"producedBy_samplingSite_location_h3_9": "8928ed791bbffff",
"registrant": "Andra Bobbitt",
"relatedResource": [],
"sampleidentifier": "igsn:10.58052/EOI00002H",
"samplingPurpose": "Not Provided"
"sampling_purpose": "Not Provided",
"curation": {
"label": "Not Provided",
"description": "Not Provided",
"access_constraints": "Not Provided",
"curation_location": "Not Provided",
"responsibility": [
{
"role": "sample owner",
"name": "Andra Bobbitt",
"contact_information": "[email protected]"
},
{
"role": "metadata publisher",
"contact_information": "[email protected]; url: https://www.geosamples.org/contact/"
}
]
},
"related_resource": [],
"authorized_by": [],
"complies_with": []
}
91 changes: 38 additions & 53 deletions examples/IEDUT103B.json
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Original file line number Diff line number Diff line change
@@ -1,37 +1,20 @@
{
"$schema": "iSamplesSchemaCore1.0.json",
"@id": "https://data.isamples.org/digitalsample/igsn/10.58052/IEDUT103B",
"authorizedBy": [],
"compliesWith": [],
"curation": {
"accessConstraints": "Not Provided",
"curationLocation": "University of Florida Department of Geological Sciences",
"description": "Not Provided",
"label": "Not Provided",
"responsibility": [
{
"contact_information": "[email protected]",
"name": "Andrea Dutton",
"role": "sample owner"
},
{
"contact_information": "[email protected]; url: https://www.geosamples.org/contact/",
"role": "metadata publisher"
}
]
},
"label": "JAM42",
"sample_identifier": "igsn:10.58052/IEDUT103B",
"description": "Macrobiology>Coral>Biology. Coring>HandHeldCorer. piece of short core",
"hasContextCategory": [
"has_context_category": [
"Not Provided"
],
"hasMaterialCategory": [
"has_material_category": [
"Organic material",
"Biogenic non-organic material"
],
"hasSpecimenCategory": [
"has_sample_object_type": [
"Not Provided"
],
"informalClassification": [
"informal_classification": [
"Not Provided"
],
"keywords": [
Expand All @@ -44,56 +27,58 @@
"scheme_name": "taxon: species"
}
],
"label": "JAM42",
"producedBy": {
"produced_by": {
"@id": "",
"description": "cruiseFieldPrgrm:UF Jamaica 2015 Fieldwork. Collection method:Coring>HandHeldCorer. piece of short core",
"hasFeatureOfInterest": "Reef",
"label": "Coring>HandHeldCorer, UF Jamaica 2015 Fieldwork",
"description": "cruiseFieldPrgrm:UF Jamaica 2015 Fieldwork. Collection method:Coring>HandHeldCorer. piece of short core",
"has_feature_of_interest": "Reef",
"responsibility": [
{
"name": "Andrea Dutton",
"role": "collector"
"role": "collector",
"name": "Andrea Dutton"
},
{
"name": "UF Jamaica 2015 Fieldwork",
"role": "sponsor"
"role": "sponsor",
"name": "UF Jamaica 2015 Fieldwork"
}
],
"resultTime": "2015-06-19",
"samplingSite": {
"result_time": "2015-06-19",
"sampling_site": {
"description": "Between Buccaneer Villa, Treasure Beach, and Great Bay",
"label": "Treasure Beach",
"location": {
"sample_location": {
"elevation": "1.626 m",
"latitude": 17.88451,
"longitude": -77.77107
},
"placeName": [
"place_name": [
"Limestone Falmouth Formation ",
"Saint Elizabeth",
"Cornwall",
"Treasure Beach"
]
}
},
"producedBy_samplingSite_location_h3_0": "8067fffffffffff",
"producedBy_samplingSite_location_h3_1": "8145bffffffffff",
"producedBy_samplingSite_location_h3_10": "8a45b29884e7fff",
"producedBy_samplingSite_location_h3_11": "8b45b29884e1fff",
"producedBy_samplingSite_location_h3_12": "8c45b29884e15ff",
"producedBy_samplingSite_location_h3_13": "8d45b29884e147f",
"producedBy_samplingSite_location_h3_14": "8e45b29884e1457",
"producedBy_samplingSite_location_h3_2": "8245b7fffffffff",
"producedBy_samplingSite_location_h3_3": "8345b2fffffffff",
"producedBy_samplingSite_location_h3_4": "8445b29ffffffff",
"producedBy_samplingSite_location_h3_5": "8545b29bfffffff",
"producedBy_samplingSite_location_h3_6": "8645b298fffffff",
"producedBy_samplingSite_location_h3_7": "8745b2988ffffff",
"producedBy_samplingSite_location_h3_8": "8845b29885fffff",
"producedBy_samplingSite_location_h3_9": "8945b29884fffff",
"registrant": "Andrea Dutton",
"relatedResource": [],
"sampleidentifier": "igsn:10.58052/IEDUT103B",
"samplingPurpose": "Paleosea-level"
"sampling_purpose": "Paleosea-level",
"curation": {
"label": "Not Provided",
"description": "Not Provided",
"access_constraints": "Not Provided",
"curation_location": "University of Florida Department of Geological Sciences",
"responsibility": [
{
"role": "sample owner",
"name": "Andrea Dutton",
"contact_information": "[email protected]"
},
{
"role": "metadata publisher",
"contact_information": "[email protected]; url: https://www.geosamples.org/contact/"
}
]
},
"related_resource": [],
"authorized_by": [],
"complies_with": []
}
87 changes: 36 additions & 51 deletions examples/IEEJR000M.json
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Original file line number Diff line number Diff line change
@@ -1,36 +1,19 @@
{
"$schema": "iSamplesSchemaCore1.0.json",
"@id": "https://data.isamples.org/digitalsample/igsn/10.58052/IEEJR000M",
"authorizedBy": [],
"compliesWith": [],
"curation": {
"accessConstraints": "Not Provided",
"curationLocation": "The University of Texas at Austin",
"description": "Not Provided",
"label": "Not Provided",
"responsibility": [
{
"contact_information": "[email protected]",
"name": "Evan Ramos",
"role": "sample owner"
},
{
"contact_information": "[email protected]; url: https://www.geosamples.org/contact/",
"role": "metadata publisher"
}
]
},
"label": "16ER6F3",
"sample_identifier": "igsn:10.58052/IEEJR000M",
"description": "Metamorphic>Meta-Carbonate>Rock. Manual>Hammer",
"hasContextCategory": [
"has_context_category": [
"Earth interior"
],
"hasMaterialCategory": [
"has_material_category": [
"Rock"
],
"hasSpecimenCategory": [
"has_sample_object_type": [
"Other solid object"
],
"informalClassification": [
"informal_classification": [
"Not Provided"
],
"keywords": [
Expand All @@ -43,28 +26,27 @@
"scheme_name": "taxon: species"
}
],
"label": "16ER6F3",
"producedBy": {
"produced_by": {
"@id": "",
"description": "Collection method:Manual>Hammer",
"hasFeatureOfInterest": "Metamorphic aureole",
"label": "Manual>Hammer",
"description": "Collection method:Manual>Hammer",
"has_feature_of_interest": "Metamorphic aureole",
"responsibility": [
{
"name": "Jade Star Lackey",
"role": "collector"
"role": "collector",
"name": "Jade Star Lackey"
}
],
"resultTime": "2021-01-19",
"samplingSite": {
"result_time": "2021-01-19",
"sampling_site": {
"description": "Not Provided",
"label": "Not Provided",
"location": {
"sample_location": {
"elevation": "Not Provided",
"latitude": 36.461666,
"longitude": -118.583888
},
"placeName": [
"place_name": [
"Mineral King",
"Sequoia National Forest",
"California",
Expand All @@ -73,23 +55,26 @@
]
}
},
"producedBy_samplingSite_location_h3_0": "8029fffffffffff",
"producedBy_samplingSite_location_h3_1": "8129bffffffffff",
"producedBy_samplingSite_location_h3_10": "8a29aa8f66dffff",
"producedBy_samplingSite_location_h3_11": "8b29aa8f66dbfff",
"producedBy_samplingSite_location_h3_12": "8c29aa8f66dbbff",
"producedBy_samplingSite_location_h3_13": "8d29aa8f66dbaff",
"producedBy_samplingSite_location_h3_14": "8e29aa8f66dbaef",
"producedBy_samplingSite_location_h3_2": "8229affffffffff",
"producedBy_samplingSite_location_h3_3": "8329aafffffffff",
"producedBy_samplingSite_location_h3_4": "8429aa9ffffffff",
"producedBy_samplingSite_location_h3_5": "8529aa8ffffffff",
"producedBy_samplingSite_location_h3_6": "8629aa8f7ffffff",
"producedBy_samplingSite_location_h3_7": "8729aa8f2ffffff",
"producedBy_samplingSite_location_h3_8": "8829aa8f2dfffff",
"producedBy_samplingSite_location_h3_9": "8929aa8f2d7ffff",
"registrant": "Evan Ramos",
"relatedResource": [],
"sampleidentifier": "igsn:10.58052/IEEJR000M",
"samplingPurpose": "Not Provided"
"sampling_purpose": "Not Provided",
"curation": {
"label": "Not Provided",
"description": "Not Provided",
"access_constraints": "Not Provided",
"curation_location": "The University of Texas at Austin",
"responsibility": [
{
"role": "sample owner",
"name": "Evan Ramos",
"contact_information": "[email protected]"
},
{
"role": "metadata publisher",
"contact_information": "[email protected]; url: https://www.geosamples.org/contact/"
}
]
},
"related_resource": [],
"authorized_by": [],
"complies_with": []
}
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