Merge pull request #81 from ocefpaf/move_micro_mamba

Use micromamba instead of conda for faster builds
ioos · May 25, 2022 · 15f3ada · 15f3ada
2 parents 41aaf9d + d9fdfdf
commit 15f3ada
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diff --git a/.binder/conda-linux-64.lock b/.binder/conda-linux-64.lock
diff --git a/.binder/conda-osx-64.lock b/.binder/conda-osx-64.lock
diff --git a/.binder/conda-win-64.lock b/.binder/conda-win-64.lock
diff --git a/.binder/environment-python_and_r.yml b/.binder/environment-python_and_r.yml
@@ -8,6 +8,7 @@ dependencies:
   - cartopy
   - cc-plugin-glider
   - cc-plugin-ncei
+  - cf_xarray
   - cftime
   - compliance-checker
   - cython
@@ -37,6 +38,7 @@ dependencies:
   - nco
   - oceans
   - oct2py
+  - odvc
   - palettable
   - phantomjs
   - pocean-core

diff --git a/.binder/environment.yml b/.binder/environment.yml
@@ -8,6 +8,7 @@ dependencies:
   - cartopy
   - cc-plugin-glider
   - cc-plugin-ncei
+  - cf_xarray
   - cftime
   - compliance-checker
   - cython
@@ -37,6 +38,7 @@ dependencies:
   - nco
   - oceans
   - oct2py
+  - odvc
   - palettable
   - phantomjs
   - pocean-core

diff --git a/.github/workflows/deploy-docs.yml b/.github/workflows/deploy-docs.yml
@@ -1,10 +1,9 @@
 name: Build and Deploy docs
 
 on:
-  push:
-    branches:
-      - main
   pull_request:
+  push:
+    branches: [main]
 
 jobs:
   build-docs:
@@ -13,23 +12,22 @@ jobs:
     steps:
       - uses: actions/checkout@v2
 
-      - name: Setup Conda
-        uses: s-weigand/setup-conda@v1
+      - name: Setup Micromamba
+        uses: mamba-org/provision-with-micromamba@main
         with:
-          activate-conda: false
-          conda-channels: conda-forge
+          environment-file: false
 
       - name: Build environment
         shell: bash -l {0}
         run: |
-          conda create --name IOOS --file .binder/conda-linux-64.lock
-          source activate IOOS
+          micromamba create --name IOOS --file .binder/conda-linux-64.lock
+          micromamba activate IOOS
 
       - name: Build documentation
         shell: bash -l {0}
         run: |
           set -e
-          source activate IOOS
+          micromamba activate IOOS
           jupyter-book build jupyterbook
 
       - name: GitHub Pages action

diff --git a/.github/workflows/test-env-linux.yml b/.github/workflows/test-env-linux.yml
@@ -10,15 +10,14 @@ jobs:
     steps:
       - uses: actions/checkout@v2
 
-      - name: Setup Conda
-        uses: s-weigand/setup-conda@v1
+      - name: Setup Micromamba
+        uses: mamba-org/provision-with-micromamba@main
         with:
-          activate-conda: false
-          conda-channels: conda-forge
+          environment-file: false
 
       - name: Build environment
         shell: bash -l {0}
         run: |
-          conda create --name IOOS --file .binder/conda-linux-64.lock
-          source activate IOOS
+          micromamba create --name IOOS --file .binder/conda-linux-64.lock
+          micromamba activate IOOS
           python -c 'import osgeo.gdal; print(dir(osgeo.gdal))'
diff --git a/.github/workflows/test-env-macOS.yml b/.github/workflows/test-env-macOS.yml
@@ -10,15 +10,14 @@ jobs:
     steps:
       - uses: actions/checkout@v2
 
-      - name: Setup Conda
-        uses: s-weigand/setup-conda@v1
+      - name: Setup Micromamba
+        uses: mamba-org/provision-with-micromamba@main
         with:
-          activate-conda: false
-          conda-channels: conda-forge
+          environment-file: false
 
       - name: Build environment
         shell: bash -l {0}
         run: |
-          conda create --name IOOS --file .binder/conda-osx-64.lock
-          source activate IOOS
+          micromamba create --name IOOS --file .binder/conda-osx-64.lock
+          micromamba activate IOOS
           python -c 'import osgeo.gdal; print(dir(osgeo.gdal))'
diff --git a/.github/workflows/test-env-win.yml b/.github/workflows/test-env-win.yml
@@ -10,15 +10,14 @@ jobs:
     steps:
       - uses: actions/checkout@v2
 
-      - name: Setup Conda
-        uses: s-weigand/setup-conda@v1
+      - name: Setup Micromamba
+        uses: mamba-org/provision-with-micromamba@main
         with:
-          activate-conda: false
-          conda-channels: conda-forge
+          environment-file: false
 
       - name: Build environment
         shell: bash -l {0}
         run: |
-          conda create --name IOOS --file .binder/conda-win-64.lock
-          source activate IOOS
+          micromamba create --name IOOS --file .binder/conda-win-64.lock
+          micromamba activate IOOS
           python -c 'import osgeo.gdal; print(dir(osgeo.gdal))'
diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
@@ -10,20 +10,19 @@ jobs:
     steps:
       - uses: actions/checkout@v2
 
-      - name: Setup Conda
-        uses: s-weigand/setup-conda@v1
+      - name: Setup Micromamba
+        uses: mamba-org/provision-with-micromamba@main
         with:
-          activate-conda: false
-          conda-channels: conda-forge
+          environment-file: false
 
       - name: Build environment
         shell: bash -l {0}
         run: |
-          conda create --name IOOS --file .binder/conda-linux-64.lock
-          source activate IOOS
+          micromamba create --name IOOS --file .binder/conda-linux-64.lock
+          micromamba activate IOOS
 
       - name: Notebook tests
         shell: bash -l {0}
         run: |
-          source activate IOOS
+          micromamba activate IOOS
           pytest --nbval --nbval-lax jupyterbook/