Skip to content

Commit

Permalink
MathewBiddle published a site update
Browse files Browse the repository at this point in the history
  • Loading branch information
MathewBiddle committed Apr 18, 2024
1 parent 3cd9d49 commit 1dfd854
Show file tree
Hide file tree
Showing 14 changed files with 40 additions and 4,466 deletions.
2 changes: 1 addition & 1 deletion 404.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@
<meta http-equiv="X-UA-Compatible" content="IE=edge" />
<title>Page not found | Darwin Core Marine Example Compendium</title>
<meta name="description" content="Scaling multiple dimensions of diversity in biological data" />
<meta name="generator" content="bookdown 0.37 and GitBook 2.6.7" />
<meta name="generator" content="bookdown 0.39 and GitBook 2.6.7" />

<meta property="og:title" content="Page not found | Darwin Core Marine Example Compendium" />
<meta property="og:type" content="book" />
Expand Down
24 changes: 12 additions & 12 deletions applications.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@
<meta http-equiv="X-UA-Compatible" content="IE=edge" />
<title>Chapter 2 Applications | Darwin Core Marine Example Compendium</title>
<meta name="description" content="Scaling multiple dimensions of diversity in biological data" />
<meta name="generator" content="bookdown 0.37 and GitBook 2.6.7" />
<meta name="generator" content="bookdown 0.39 and GitBook 2.6.7" />

<meta property="og:title" content="Chapter 2 Applications | Darwin Core Marine Example Compendium" />
<meta property="og:type" content="book" />
Expand Down Expand Up @@ -1096,7 +1096,7 @@ <h5><span class="header-section-number">2.3.2.2.2</span> Occurrence Table<a href
## $ order &lt;chr&gt; &quot;Alismatales&quot;, &quot;Alismatales&quot;, &quot;Alismatales&quot;, &quot;Alisma…
## $ family &lt;chr&gt; &quot;Zosteraceae&quot;, &quot;Zosteraceae&quot;, &quot;Zosteraceae&quot;, &quot;Zoster…
## $ genus &lt;chr&gt; &quot;Zostera&quot;, &quot;Zostera&quot;, &quot;Zostera&quot;, &quot;Zostera&quot;, &quot;Zostera…
## $ citation &lt;chr&gt; &quot;WoRMS (2023). Zostera subg. Zostera marina Linnaeus…
## $ citation &lt;chr&gt; &quot;WoRMS (2024). Zostera subg. Zostera marina Linnaeus…
## $ lsid &lt;chr&gt; &quot;urn:lsid:marinespecies.org:taxname:145795&quot;, &quot;urn:ls…
## $ isMarine &lt;int&gt; 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1…
## $ match_type &lt;chr&gt; &quot;exact&quot;, &quot;exact&quot;, &quot;exact&quot;, &quot;exact&quot;, &quot;exact&quot;, &quot;exact&quot;…
Expand Down Expand Up @@ -1202,23 +1202,23 @@ <h3><span class="header-section-number">2.3.3</span> Session Info<a href="applic
## other attached packages:
## [1] worrms_0.4.3 magrittr_2.0.3 knitr_1.42 here_1.0.1
## [5] lubridate_1.9.3 forcats_1.0.0 stringr_1.5.0 dplyr_1.1.4
## [9] purrr_1.0.2 readr_2.1.4 tidyr_1.3.0 tibble_3.2.1
## [13] ggplot2_3.4.4 tidyverse_2.0.0
## [9] purrr_1.0.2 readr_2.1.5 tidyr_1.3.1 tibble_3.2.1
## [13] ggplot2_3.5.0 tidyverse_2.0.0
##
## loaded via a namespace (and not attached):
## [1] tidyselect_1.2.0 xfun_0.39 bslib_0.4.2 colorspace_2.1-0
## [5] vctrs_0.6.5 generics_0.1.3 htmltools_0.5.7 yaml_2.3.7
## [1] tidyselect_1.2.1 xfun_0.39 bslib_0.4.2 colorspace_2.1-0
## [5] vctrs_0.6.5 generics_0.1.3 htmltools_0.5.8.1 yaml_2.3.7
## [9] utf8_1.2.3 rlang_1.1.1 jquerylib_0.1.4 pillar_1.9.0
## [13] httpcode_0.3.0 glue_1.6.2 withr_2.5.0 bit64_4.0.5
## [17] readxl_1.4.3 lifecycle_1.0.3 munsell_0.5.0 gtable_0.3.4
## [17] readxl_1.4.3 lifecycle_1.0.3 munsell_0.5.1 gtable_0.3.4
## [21] cellranger_1.1.0 evaluate_0.21 tzdb_0.3.0 fastmap_1.1.1
## [25] curl_5.2.0 parallel_4.1.1 fansi_1.0.4 triebeard_0.4.1
## [29] urltools_1.7.3 Rcpp_1.0.11 scales_1.3.0 cachem_1.0.8
## [25] curl_5.2.1 parallel_4.1.1 fansi_1.0.4 triebeard_0.4.1
## [29] urltools_1.7.3 Rcpp_1.0.12 scales_1.3.0 cachem_1.0.8
## [33] vroom_1.6.3 jsonlite_1.8.4 bit_4.0.5 hms_1.1.3
## [37] digest_0.6.31 stringi_1.7.12 bookdown_0.37 grid_4.1.1
## [37] digest_0.6.31 stringi_1.7.12 bookdown_0.39 grid_4.1.1
## [41] rprojroot_2.0.4 cli_3.6.1 tools_4.1.1 sass_0.4.6
## [45] crul_1.4.0 crayon_1.5.2 pkgconfig_2.0.3 timechange_0.2.0
## [49] rmarkdown_2.21 rstudioapi_0.15.0 R6_2.5.1 compiler_4.1.1</code></pre>
## [45] crul_1.4.2 crayon_1.5.2 pkgconfig_2.0.3 timechange_0.3.0
## [49] rmarkdown_2.21 rstudioapi_0.16.0 R6_2.5.1 compiler_4.1.1</code></pre>
</div>
</div>
<div id="trawl-data" class="section level2 hasAnchor" number="2.4">
Expand Down
Binary file modified darwin-core-guide.epub
View file
Binary file not shown.
Binary file modified darwin-core-guide.pdf
View file
Binary file not shown.
32 changes: 16 additions & 16 deletions darwin-core-guide.tex
View file
Original file line number Diff line number Diff line change
Expand Up @@ -138,7 +138,7 @@

\title{Darwin Core Marine Example Compendium}
\author{By: \href{https://github.com/ioos/bio_data_guide/graphs/contributors}{Standardizing Marine Biological Data Working Group}}
\date{Updated: 2023-12-12}
\date{Updated: 2024-04-18}

\begin{document}
\maketitle
Expand Down Expand Up @@ -1254,7 +1254,7 @@ \subsubsection{Create Event, Occurrence, and eMoF tables}\label{create-event-occ
## $ order <chr> "Alismatales", "Alismatales", "Alismatales", "Alisma~
## $ family <chr> "Zosteraceae", "Zosteraceae", "Zosteraceae", "Zoster~
## $ genus <chr> "Zostera", "Zostera", "Zostera", "Zostera", "Zostera~
## $ citation <chr> "WoRMS (2023). Zostera subg. Zostera marina Linnaeus~
## $ citation <chr> "WoRMS (2024). Zostera subg. Zostera marina Linnaeus~
## $ lsid <chr> "urn:lsid:marinespecies.org:taxname:145795", "urn:ls~
## $ isMarine <int> 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1~
## $ match_type <chr> "exact", "exact", "exact", "exact", "exact", "exact"~
Expand Down Expand Up @@ -1385,22 +1385,22 @@ \subsection{Session Info}\label{session-info}}
## other attached packages:
## [1] worrms_0.4.3 magrittr_2.0.3 knitr_1.42 here_1.0.1
## [5] lubridate_1.9.3 forcats_1.0.0 stringr_1.5.0 dplyr_1.1.4
## [9] purrr_1.0.2 readr_2.1.4 tidyr_1.3.0 tibble_3.2.1
## [13] ggplot2_3.4.4 tidyverse_2.0.0
## [9] purrr_1.0.2 readr_2.1.5 tidyr_1.3.1 tibble_3.2.1
## [13] ggplot2_3.5.0 tidyverse_2.0.0
##
## loaded via a namespace (and not attached):
## [1] tidyselect_1.2.0 xfun_0.39 colorspace_2.1-0 vctrs_0.6.5
## [5] generics_0.1.3 htmltools_0.5.7 yaml_2.3.7 utf8_1.2.3
## [1] tidyselect_1.2.1 xfun_0.39 colorspace_2.1-0 vctrs_0.6.5
## [5] generics_0.1.3 htmltools_0.5.8.1 yaml_2.3.7 utf8_1.2.3
## [9] rlang_1.1.1 pillar_1.9.0 glue_1.6.2 httpcode_0.3.0
## [13] withr_2.5.0 bit64_4.0.5 readxl_1.4.3 lifecycle_1.0.3
## [17] munsell_0.5.0 gtable_0.3.4 cellranger_1.1.0 evaluate_0.21
## [21] tzdb_0.3.0 fastmap_1.1.1 parallel_4.1.1 curl_5.2.0
## [25] fansi_1.0.4 triebeard_0.4.1 urltools_1.7.3 Rcpp_1.0.11
## [17] munsell_0.5.1 gtable_0.3.4 cellranger_1.1.0 evaluate_0.21
## [21] tzdb_0.3.0 fastmap_1.1.1 parallel_4.1.1 curl_5.2.1
## [25] fansi_1.0.4 triebeard_0.4.1 urltools_1.7.3 Rcpp_1.0.12
## [29] scales_1.3.0 jsonlite_1.8.4 vroom_1.6.3 bit_4.0.5
## [33] hms_1.1.3 digest_0.6.31 stringi_1.7.12 bookdown_0.37
## [33] hms_1.1.3 digest_0.6.31 stringi_1.7.12 bookdown_0.39
## [37] grid_4.1.1 rprojroot_2.0.4 cli_3.6.1 tools_4.1.1
## [41] crul_1.4.0 crayon_1.5.2 pkgconfig_2.0.3 timechange_0.2.0
## [45] rmarkdown_2.21 rstudioapi_0.15.0 R6_2.5.1 compiler_4.1.1
## [41] crul_1.4.2 crayon_1.5.2 pkgconfig_2.0.3 timechange_0.3.0
## [45] rmarkdown_2.21 rstudioapi_0.16.0 R6_2.5.1 compiler_4.1.1
\end{verbatim}
\hypertarget{trawl-data}{%
Expand Down Expand Up @@ -2227,11 +2227,11 @@ \chapter*{References}\label{references}}
\leavevmode\vadjust pre{\hypertarget{ref-bookdown2016}{}}%
---------. 2016. \emph{Bookdown: Authoring Books and Technical Documents with {R} Markdown}. Boca Raton, Florida: Chapman; Hall/CRC. \url{https://bookdown.org/yihui/bookdown}.
\leavevmode\vadjust pre{\hypertarget{ref-R-bookdown}{}}%
---------. 2023a. \emph{Bookdown: Authoring Books and Technical Documents with r Markdown}. \url{https://CRAN.R-project.org/package=bookdown}.
\leavevmode\vadjust pre{\hypertarget{ref-R-knitr}{}}%
---------. 2023b. \emph{Knitr: A General-Purpose Package for Dynamic Report Generation in r}. \url{https://yihui.org/knitr/}.
---------. 2023. \emph{Knitr: A General-Purpose Package for Dynamic Report Generation in r}. \url{https://yihui.org/knitr/}.
\leavevmode\vadjust pre{\hypertarget{ref-R-bookdown}{}}%
---------. 2024. \emph{Bookdown: Authoring Books and Technical Documents with r Markdown}. \url{https://CRAN.R-project.org/package=bookdown}.
\leavevmode\vadjust pre{\hypertarget{ref-rmarkdown2018}{}}%
Xie, Yihui, J. J. Allaire, and Garrett Grolemund. 2018. \emph{R Markdown: The Definitive Guide}. Boca Raton, Florida: Chapman; Hall/CRC. \url{https://bookdown.org/yihui/rmarkdown}.
Expand Down
2 changes: 1 addition & 1 deletion extras.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@
<meta http-equiv="X-UA-Compatible" content="IE=edge" />
<title>C Extras | Darwin Core Marine Example Compendium</title>
<meta name="description" content="Scaling multiple dimensions of diversity in biological data" />
<meta name="generator" content="bookdown 0.37 and GitBook 2.6.7" />
<meta name="generator" content="bookdown 0.39 and GitBook 2.6.7" />

<meta property="og:title" content="C Extras | Darwin Core Marine Example Compendium" />
<meta property="og:type" content="book" />
Expand Down
2 changes: 1 addition & 1 deletion frequently-asked-questions.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@
<meta http-equiv="X-UA-Compatible" content="IE=edge" />
<title>A Frequently Asked Questions | Darwin Core Marine Example Compendium</title>
<meta name="description" content="Scaling multiple dimensions of diversity in biological data" />
<meta name="generator" content="bookdown 0.37 and GitBook 2.6.7" />
<meta name="generator" content="bookdown 0.39 and GitBook 2.6.7" />

<meta property="og:title" content="A Frequently Asked Questions | Darwin Core Marine Example Compendium" />
<meta property="og:type" content="book" />
Expand Down
4 changes: 2 additions & 2 deletions index.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@
<meta http-equiv="X-UA-Compatible" content="IE=edge" />
<title>Darwin Core Marine Example Compendium</title>
<meta name="description" content="Scaling multiple dimensions of diversity in biological data" />
<meta name="generator" content="bookdown 0.37 and GitBook 2.6.7" />
<meta name="generator" content="bookdown 0.39 and GitBook 2.6.7" />

<meta property="og:title" content="Darwin Core Marine Example Compendium" />
<meta property="og:type" content="book" />
Expand Down Expand Up @@ -242,7 +242,7 @@ <h1>
<div id="header">
<h1 class="title">Darwin Core Marine Example Compendium</h1>
<p class="author"><em>By: <a href="https://github.com/ioos/bio_data_guide/graphs/contributors">Standardizing Marine Biological Data Working Group</a> <img src="https://contrib.rocks/image?repo=ioos/bio_data_guide" /></em></p>
<p class="date"><em>Updated: 2023-12-12</em></p>
<p class="date"><em>Updated: 2024-04-18</em></p>
</div>
<div id="preface" class="section level1 unnumbered hasAnchor">
<h1>Preface<a href="index.html#preface" class="anchor-section" aria-label="Anchor link to header"></a></h1>
Expand Down
2 changes: 1 addition & 1 deletion intro.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@
<meta http-equiv="X-UA-Compatible" content="IE=edge" />
<title>Chapter 1 Introduction | Darwin Core Marine Example Compendium</title>
<meta name="description" content="Scaling multiple dimensions of diversity in biological data" />
<meta name="generator" content="bookdown 0.37 and GitBook 2.6.7" />
<meta name="generator" content="bookdown 0.39 and GitBook 2.6.7" />

<meta property="og:title" content="Chapter 1 Introduction | Darwin Core Marine Example Compendium" />
<meta property="og:type" content="book" />
Expand Down
2 changes: 1 addition & 1 deletion libs/gitbook-2.6.7/css/plugin-highlight.css
View file
Original file line number Diff line number Diff line change
Expand Up @@ -133,7 +133,7 @@
.book.color-theme-1 .book-body .page-wrapper .page-inner section.normal code {
/*
Orginal Style from ethanschoonover.com/solarized (c) Jeremy Hull <[email protected]>
Original Style from ethanschoonover.com/solarized (c) Jeremy Hull <[email protected]>
*/
/* Solarized Green */
Expand Down
Loading

0 comments on commit 1dfd854

Please sign in to comment.