feat(IPVC-2335): add the load-seqinfo step

[sptaylor]

Adds load-seqinfo to pipeline

+ uta --conf=etc/global.conf --conf=etc/[email protected] load-seqinfo /workdir/loading/seqinfo.gz
+ tee /workdir/logs/load-seqinfo.log
INFO:uta.cli:loaded etc/global.conf
INFO:uta.cli:loaded etc/[email protected]
INFO:uta.cli:connecting to postgresql://uta_admin@localhost/uta
INFO:uta:connected to postgresql://uta_admin@localhost/uta
INFO:uta.loading:opened /workdir/loading/seqinfo.gz
INFO:biocommons.seqrepo.fastadir.fastadir:File descriptor caching disabled
WARNING:biocommons.seqrepo.seqrepo:translate_ncbi_namespace is obsolete; translation is now automatic; this flag will be removed
INFO:uta.loading:Opened SeqRepo(root_dir=/usr/local/share/seqrepo/2024-02-20, writeable=False)
INFO:uta.loading:0 annotations created/1 sequences seen (0.1%)/1765 sequences total
INFO:uta.loading:6 annotations created/101 sequences seen (5.7%)/1765 sequences total
INFO:uta.loading:10 annotations created/201 sequences seen (11.4%)/1765 sequences total
INFO:uta.loading:15 annotations created/301 sequences seen (17.1%)/1765 sequences total
INFO:uta.loading:26 annotations created/401 sequences seen (22.7%)/1765 sequences total
INFO:uta.loading:32 annotations created/501 sequences seen (28.4%)/1765 sequences total
INFO:uta.loading:45 annotations created/601 sequences seen (34.1%)/1765 sequences total
INFO:uta.loading:57 annotations created/701 sequences seen (39.7%)/1765 sequences total
INFO:uta.loading:68 annotations created/801 sequences seen (45.4%)/1765 sequences total
INFO:uta.loading:76 annotations created/901 sequences seen (51.0%)/1765 sequences total
INFO:uta.loading:86 annotations created/1001 sequences seen (56.7%)/1765 sequences total
INFO:uta.loading:94 annotations created/1101 sequences seen (62.4%)/1765 sequences total
INFO:uta.loading:107 annotations created/1201 sequences seen (68.0%)/1765 sequences total
INFO:uta.loading:115 annotations created/1301 sequences seen (73.7%)/1765 sequences total
INFO:uta.loading:128 annotations created/1401 sequences seen (79.4%)/1765 sequences total
INFO:uta.loading:136 annotations created/1501 sequences seen (85.0%)/1765 sequences total
INFO:uta.loading:142 annotations created/1601 sequences seen (90.7%)/1765 sequences total
INFO:uta.loading:153 annotations created/1701 sequences seen (96.4%)/1765 sequences total
INFO:uta.cli:load-seqinfo: 11.7s elapsed

[bsgiles73]

Looks good, thanks @sptaylor

[sptaylor]

I had to resolve the conflict around the file change, can I get another approve 🙏 ?