feat(IPVC-2283): mitochondrial transcript workflow #20
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…o step can come after extract
bsgiles73
requested changes
Apr 8, 2024
sbin/uta-extract
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| tee "$log_dir/filter_exonset_transcripts.log" | ||
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| # move fasta files into same dir | ||
| cp $ncbi_dir/refseq/H_sapiens/mRNA_Prot/human.*.rna.fna.gz $working_dir/ |
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I changed to hard links, but the linked files turned out effectively to be copies. The inode numbers were different (when inspected with ls -i). I suspect it has something to do with hard linking across docker volume mounts. I'll leave the hard linking in since the workflow still runs fine.
bsgiles73
approved these changes
Apr 9, 2024
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run-uta-build.shbecame the load stepsbin/uta-load) and seqrepo load