feat(IPVC-2264): rename schema rather than export and re-import

invitae · Apr 12, 2024 · d5833c4 · d5833c4
1 parent 0d4d308
commit d5833c4
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Showing 3 changed files with 3 additions and 127 deletions.
diff --git a/etc/scripts/backfill_gene_id.py b/etc/scripts/backfill_gene_id.py
diff --git a/etc/scripts/create-new-schema.sh b/etc/scripts/create-new-schema.sh
@@ -21,5 +21,4 @@ pg_dump -U uta_admin -h localhost -d uta -n "$source_uta_v" | \
 # create new schema
 gzip -cdq $dumps_dir/"$source_uta_v".pgd.gz | \
  sbin/pg-dump-schema-rename "$source_uta_v" "$dest_uta_v" | \
- sbin/pg-dump-schema-rename "uta_1_1" "$dest_uta_v" | \
- psql -U uta_admin -h localhost -d uta -aeE
+ psql -U uta_admin -h localhost -d uta -aeE
diff --git a/misc/gene-update/upgrade-uta-schema.sh b/misc/gene-update/upgrade-uta-schema.sh
@@ -50,12 +50,5 @@ python misc/gene-update/backfill_gene_id.py \
 # run Alembic migrations to add constraints and update existing views
 alembic -c etc/alembic.ini upgrade head
 
-## Copy data into destination schema
-# dump working schema
-pg_dump -U uta_admin -h localhost -d uta -n "$working_uta_v" | \
- gzip -c > "$dumps_dir/$working_uta_v".pgd.gz
-
-# copy data into destination schema
-gzip -cdq "$dumps_dir/$working_uta_v".pgd.gz | \
- sbin/pg-dump-schema-rename "$working_uta_v" "$dest_uta_v" | \
- psql -U uta_admin -h localhost -d uta -aeE
+## Rename schema to destination schema name
+psql -h localhost -U uta_admin -d uta -c "ALTER SCHEMA uta RENAME TO $dest_uta_v";