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Python dev #38

Merged
merged 81 commits into from
Dec 5, 2023
Merged

Python dev #38

merged 81 commits into from
Dec 5, 2023

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bkmarzouk
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default branch python is not actually functional ... there is an error in CLI arg parse which means that users can not run the core tool. Merging python-dev will update a number of features and bug fixes.

bkmarzouk and others added 30 commits November 9, 2023 10:28
…ce r base version requirements to help resolve deps
…ting processing. This prevents non-zero exit statuses from intermediate pipes which can cause runtime errors.
status badge for dev tests
…on-conda users / those who don't deploy setup.sh
bkmarzouk and others added 28 commits November 22, 2023 16:47
Annotate option for grch37 in VCF files
@bkmarzouk bkmarzouk self-assigned this Dec 5, 2023
@bkmarzouk bkmarzouk merged commit a67c0c8 into python Dec 5, 2023
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