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Requests #15

Closed
wants to merge 13 commits into from
Closed

Requests #15

wants to merge 13 commits into from

Commits on Oct 4, 2023

  1. update pre-commit

    @bkmarzouk
    bkmarzouk committed Oct 4, 2023
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  2. add additional dependencies to hook for mypy. Complains about missing… 

    … types-requests stubs; hnce add as dependency
    @bkmarzouk
    bkmarzouk committed Oct 4, 2023
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  3. template base class of genome downloads

    @bkmarzouk
    bkmarzouk committed Oct 4, 2023
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  4. genralise downloads to ensembl ftp server: hardcoded excpetion for gr… 

    …ch37
    @bkmarzouk
    bkmarzouk committed Oct 4, 2023
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Commits on Oct 9, 2023

  1. tests for url utils helper methods

    @bkmarzouk
    bkmarzouk committed Oct 9, 2023
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  2. ignore cache file

    @bkmarzouk
    bkmarzouk committed Oct 9, 2023
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  3. tests and refinement of downloaders

    @bkmarzouk
    bkmarzouk committed Oct 9, 2023
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  4. rename check_ensembl_toplevel_url -> check_ensembl_file_url

    @bkmarzouk
    bkmarzouk committed Oct 9, 2023
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  5. test _check_release_ok on grch37 and grch38 instances

    @bkmarzouk
    bkmarzouk committed Oct 9, 2023
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  6. add missing methods for derived files from *.fa.gz. Update downloader… 

    … to use chunking of stream to view progress.
    @bkmarzouk
    bkmarzouk committed Oct 9, 2023
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Commits on Oct 10, 2023

  1. move EnsemblData to objects.py

    @bkmarzouk
    bkmarzouk committed Oct 10, 2023
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  2. refs for GRCh38 108

    @bkmarzouk
    bkmarzouk committed Oct 10, 2023
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  3. minor typo

    @bkmarzouk
    bkmarzouk committed Oct 10, 2023
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