Merge pull request #7 from instituteofcancerresearch/osx-actions

Mac OS actions
instituteofcancerresearch · Sep 20, 2023 · c52cbaa · c52cbaa
2 parents cebad7c + 81bdbbf
commit c52cbaa
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Showing 2 changed files with 68 additions and 4 deletions.
diff --git a/.github/workflows/dev_tests.yml b/.github/workflows/dev_tests.yml
@@ -0,0 +1,62 @@
+name: SOPRANO (Dev) Tests
+
+on:
+  push:
+    branches:
+      - python-dev
+  pull_request:
+    branches:
+      - python-dev
+
+jobs:
+  lint:
+    strategy:
+      matrix:
+        os: ["ubuntu-latest"]
+        python-version: ["3.11"]
+    name: lint with python ${{ matrix.python-version }} on ${{ matrix.os }}
+    runs-on: ${{ matrix.os }}
+    steps:
+      - uses: actions/checkout@v3
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v4
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Install ruff and black
+        run: |
+          python -m pip install --upgrade pip
+          pip install ruff black
+      - name: Lint check with ruff
+        run: |
+          ruff --format=github --target-version=py311 --line-length 79 .
+      - name: Style check with black
+        run: |
+          black ./ --check --line-length 79
+  test:
+    strategy:
+      matrix:
+        os: ["ubuntu-latest"]
+        python-version: ["3.11"]
+    name: test with python ${{ matrix.python-version }} on ${{ matrix.os }}
+    runs-on: ${{ matrix.os }}
+    steps:
+      - uses: actions/checkout@v3
+      - uses: mamba-org/setup-micromamba@v1
+        with:
+          environment-file: src/SOPRANO/local.yml
+          init-shell: bash
+      - name: Install SOPRANO
+        shell: bash -l {0}
+        run: |
+          micromamba activate soprano-dev
+          pip install -e .[ci]
+      - name: Test conda environment
+        shell: bash -l {0}
+        run: |
+          micromamba activate soprano-dev
+          pytest tests/test_configuration
+      - name: Test units
+        shell: bash -l {0}
+        run: |
+          micromamba activate soprano-dev
+          pytest tests/test_units
diff --git a/.github/workflows/test.yml → .github/workflows/main_tests.yml b/.github/workflows/test.yml → .github/workflows/main_tests.yml
@@ -1,12 +1,14 @@
-name: SOPRANO Tests
+name: SOPRANO (Main) Tests
 
 on:
   push:
     branches:
-      - python-dev
+      - python
+      - master
   pull_request:
     branches:
       - python
+      - master
 
 jobs:
   lint:
@@ -35,7 +37,7 @@ jobs:
   test:
     strategy:
       matrix:
-        os: ["ubuntu-latest"]  # To include macos-latest
+        os: ["ubuntu-latest", "macos-latest"]
         python-version: ["3.11"]
     name: test with python ${{ matrix.python-version }} on ${{ matrix.os }}
     runs-on: ${{ matrix.os }}
@@ -60,7 +62,7 @@ jobs:
         run: |
           micromamba activate soprano-dev
           pytest tests/test_units
-#      - name: Test integration
+#      - name: Test integration # TODO: Need to think about this
 #        shell: bash -l {0}
 #        run: |
 #          micromamba activate soprano-dev