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#4240 - Facilitate using DIAM serializer in isolation
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- Introduce additional new modules for APIs
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reckart committed Oct 13, 2023
1 parent b65a440 commit ad6161d
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2 changes: 1 addition & 1 deletion inception/inception-active-learning/pom.xml
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</dependency>
<dependency>
<groupId>de.tudarmstadt.ukp.inception.app</groupId>
<artifactId>inception-api</artifactId>
<artifactId>inception-documents-api</artifactId>
</dependency>
<dependency>
<groupId>de.tudarmstadt.ukp.inception.app</groupId>
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import org.springframework.context.ApplicationEventPublisher;
import org.springframework.transaction.annotation.Transactional;

import de.tudarmstadt.ukp.clarin.webanno.api.DocumentService;
import de.tudarmstadt.ukp.clarin.webanno.model.AnnotationLayer;
import de.tudarmstadt.ukp.clarin.webanno.model.SourceDocument;
import de.tudarmstadt.ukp.clarin.webanno.security.UserDao;
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import de.tudarmstadt.ukp.inception.active.learning.event.ActiveLearningRecommendationEvent;
import de.tudarmstadt.ukp.inception.active.learning.strategy.ActiveLearningStrategy;
import de.tudarmstadt.ukp.inception.annotation.layer.span.SpanAdapter;
import de.tudarmstadt.ukp.inception.documents.api.DocumentService;
import de.tudarmstadt.ukp.inception.recommendation.api.LearningRecordService;
import de.tudarmstadt.ukp.inception.recommendation.api.RecommendationService;
import de.tudarmstadt.ukp.inception.recommendation.api.model.AnnotationSuggestion;
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import org.springframework.context.annotation.Bean;
import org.springframework.context.annotation.Configuration;

import de.tudarmstadt.ukp.clarin.webanno.api.DocumentService;
import de.tudarmstadt.ukp.clarin.webanno.security.UserDao;
import de.tudarmstadt.ukp.inception.active.learning.ActiveLearningService;
import de.tudarmstadt.ukp.inception.active.learning.ActiveLearningServiceImpl;
import de.tudarmstadt.ukp.inception.active.learning.log.ActiveLearningRecommendationEventAdapter;
import de.tudarmstadt.ukp.inception.active.learning.log.ActiveLearningSuggestionOfferedAdapter;
import de.tudarmstadt.ukp.inception.active.learning.sidebar.ActiveLearningSidebarFactory;
import de.tudarmstadt.ukp.inception.documents.api.DocumentService;
import de.tudarmstadt.ukp.inception.recommendation.api.LearningRecordService;
import de.tudarmstadt.ukp.inception.recommendation.api.RecommendationService;
import de.tudarmstadt.ukp.inception.recommendation.config.RecommenderServiceAutoConfiguration;
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import org.slf4j.LoggerFactory;
import org.wicketstuff.event.annotation.OnEvent;

import de.tudarmstadt.ukp.clarin.webanno.api.DocumentService;
import de.tudarmstadt.ukp.clarin.webanno.api.annotation.keybindings.KeyBindingsPanel;
import de.tudarmstadt.ukp.clarin.webanno.api.casstorage.CasProvider;
import de.tudarmstadt.ukp.clarin.webanno.model.AnnotationFeature;
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import de.tudarmstadt.ukp.inception.annotation.layer.relation.RelationCreatedEvent;
import de.tudarmstadt.ukp.inception.annotation.layer.span.SpanCreatedEvent;
import de.tudarmstadt.ukp.inception.annotation.layer.span.SpanDeletedEvent;
import de.tudarmstadt.ukp.inception.documents.api.DocumentService;
import de.tudarmstadt.ukp.inception.editor.action.AnnotationActionHandler;
import de.tudarmstadt.ukp.inception.recommendation.api.LearningRecordService;
import de.tudarmstadt.ukp.inception.recommendation.api.RecommendationService;
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4 changes: 4 additions & 0 deletions inception/inception-agreement/pom.xml
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<artifactId>uimafit-core</artifactId>
</dependency>

<dependency>
<groupId>de.tudarmstadt.ukp.inception.app</groupId>
<artifactId>inception-documents-api</artifactId>
</dependency>
<dependency>
<groupId>de.tudarmstadt.ukp.inception.app</groupId>
<artifactId>inception-curation-legacy</artifactId>
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import de.tudarmstadt.ukp.clarin.webanno.agreement.AgreementUtils;
import de.tudarmstadt.ukp.clarin.webanno.agreement.PairwiseAnnotationResult;
import de.tudarmstadt.ukp.clarin.webanno.agreement.measures.DefaultAgreementTraits;
import de.tudarmstadt.ukp.clarin.webanno.api.DocumentService;
import de.tudarmstadt.ukp.clarin.webanno.api.ProjectService;
import de.tudarmstadt.ukp.clarin.webanno.curation.casdiff.CasDiff;
import de.tudarmstadt.ukp.clarin.webanno.curation.casdiff.api.DiffAdapter;
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import de.tudarmstadt.ukp.clarin.webanno.support.lambda.LambdaAjaxFormComponentUpdatingBehavior;
import de.tudarmstadt.ukp.clarin.webanno.support.wicket.AjaxDownloadBehavior;
import de.tudarmstadt.ukp.clarin.webanno.support.wicket.AjaxDownloadLink;
import de.tudarmstadt.ukp.inception.documents.api.DocumentService;
import de.tudarmstadt.ukp.inception.schema.AnnotationSchemaService;

public class PairwiseCodingAgreementTable
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import de.agilecoders.wicket.core.markup.html.bootstrap.components.TooltipConfig.Placement;
import de.tudarmstadt.ukp.clarin.webanno.agreement.AgreementResult;
import de.tudarmstadt.ukp.clarin.webanno.agreement.PairwiseAnnotationResult;
import de.tudarmstadt.ukp.clarin.webanno.api.DocumentService;
import de.tudarmstadt.ukp.clarin.webanno.api.ProjectService;
import de.tudarmstadt.ukp.clarin.webanno.security.UserDao;
import de.tudarmstadt.ukp.clarin.webanno.support.DefaultRefreshingView;
import de.tudarmstadt.ukp.clarin.webanno.support.DescriptionTooltipBehavior;
import de.tudarmstadt.ukp.clarin.webanno.support.bootstrap.PopoverBehavior;
import de.tudarmstadt.ukp.inception.documents.api.DocumentService;
import de.tudarmstadt.ukp.inception.schema.AnnotationSchemaService;

public class PairwiseUnitizingAgreementTable
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4 changes: 4 additions & 0 deletions inception/inception-annotation-storage/pom.xml
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<groupId>de.tudarmstadt.ukp.inception.app</groupId>
<artifactId>inception-api</artifactId>
</dependency>
<dependency>
<groupId>de.tudarmstadt.ukp.inception.app</groupId>
<artifactId>inception-documents-api</artifactId>
</dependency>
<dependency>
<groupId>de.tudarmstadt.ukp.inception.app</groupId>
<artifactId>inception-annotation-storage-api</artifactId>
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import org.springframework.context.annotation.Configuration;

import de.tudarmstadt.ukp.clarin.webanno.api.casstorage.CasStorageService;
import de.tudarmstadt.ukp.clarin.webanno.api.config.RepositoryProperties;
import de.tudarmstadt.ukp.clarin.webanno.diag.CasDoctor;
import de.tudarmstadt.ukp.inception.annotation.storage.CasStorageServiceImpl;
import de.tudarmstadt.ukp.inception.annotation.storage.CasStorageServiceSharedAccessCacheAdapter;
import de.tudarmstadt.ukp.inception.annotation.storage.driver.CasStorageDriver;
import de.tudarmstadt.ukp.inception.annotation.storage.driver.filesystem.FileSystemCasStorageDriver;
import de.tudarmstadt.ukp.inception.documents.api.RepositoryProperties;
import de.tudarmstadt.ukp.inception.schema.AnnotationSchemaService;

@Configuration
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import de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil;
import de.tudarmstadt.ukp.clarin.webanno.api.casstorage.ConcurentCasModificationException;
import de.tudarmstadt.ukp.clarin.webanno.api.config.RepositoryProperties;
import de.tudarmstadt.ukp.clarin.webanno.api.type.CASMetadata;
import de.tudarmstadt.ukp.clarin.webanno.model.SourceDocument;
import de.tudarmstadt.ukp.clarin.webanno.support.wicket.WicketUtil;
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import de.tudarmstadt.ukp.inception.annotation.storage.config.CasStorageBackupProperties;
import de.tudarmstadt.ukp.inception.annotation.storage.config.CasStorageProperties;
import de.tudarmstadt.ukp.inception.annotation.storage.driver.CasStorageDriver;
import de.tudarmstadt.ukp.inception.documents.api.RepositoryProperties;

public class FileSystemCasStorageDriver
implements CasStorageDriver
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import de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil;
import de.tudarmstadt.ukp.clarin.webanno.api.casstorage.CasProvider;
import de.tudarmstadt.ukp.clarin.webanno.api.casstorage.CasSessionException;
import de.tudarmstadt.ukp.clarin.webanno.api.config.RepositoryProperties;
import de.tudarmstadt.ukp.clarin.webanno.api.event.LayerConfigurationChangedEvent;
import de.tudarmstadt.ukp.clarin.webanno.api.type.CASMetadata;
import de.tudarmstadt.ukp.clarin.webanno.model.Project;
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import de.tudarmstadt.ukp.inception.annotation.storage.config.CasStorageCachePropertiesImpl;
import de.tudarmstadt.ukp.inception.annotation.storage.config.CasStoragePropertiesImpl;
import de.tudarmstadt.ukp.inception.annotation.storage.driver.filesystem.FileSystemCasStorageDriver;
import de.tudarmstadt.ukp.inception.documents.api.RepositoryProperties;

public class CasStorageServiceImplTest
{
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4 changes: 4 additions & 0 deletions inception/inception-api-annotation/pom.xml
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<groupId>de.tudarmstadt.ukp.inception.app</groupId>
<artifactId>inception-api</artifactId>
</dependency>
<dependency>
<groupId>de.tudarmstadt.ukp.inception.app</groupId>
<artifactId>inception-documents-api</artifactId>
</dependency>
<dependency>
<groupId>de.tudarmstadt.ukp.inception.app</groupId>
<artifactId>inception-api-schema</artifactId>
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import org.slf4j.LoggerFactory;

import de.tudarmstadt.ukp.clarin.webanno.api.DocumentImportExportService;
import de.tudarmstadt.ukp.clarin.webanno.api.DocumentService;
import de.tudarmstadt.ukp.clarin.webanno.api.format.FormatSupport;
import de.tudarmstadt.ukp.clarin.webanno.support.lambda.LambdaAjaxFormComponentUpdatingBehavior;
import de.tudarmstadt.ukp.clarin.webanno.support.lambda.LambdaAjaxLink;
import de.tudarmstadt.ukp.clarin.webanno.support.wicket.AjaxDownloadLink;
import de.tudarmstadt.ukp.clarin.webanno.support.wicket.InputStreamResourceStream;
import de.tudarmstadt.ukp.inception.documents.api.DocumentService;
import de.tudarmstadt.ukp.inception.rendering.editorstate.AnnotatorState;

/**
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import de.tudarmstadt.ukp.clarin.webanno.api.annotation.rendering.PreRendererImpl;
import de.tudarmstadt.ukp.clarin.webanno.api.annotation.rendering.RenderNotificationRenderStep;
import de.tudarmstadt.ukp.clarin.webanno.api.config.AnnotationSchemaProperties;
import de.tudarmstadt.ukp.clarin.webanno.api.config.RepositoryProperties;
import de.tudarmstadt.ukp.inception.documents.api.RepositoryProperties;
import de.tudarmstadt.ukp.inception.preferences.PreferencesService;
import de.tudarmstadt.ukp.inception.rendering.coloring.ColoringService;
import de.tudarmstadt.ukp.inception.schema.AnnotationSchemaService;
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import org.wicketstuff.urlfragment.UrlFragment;
import org.wicketstuff.urlfragment.UrlParametersReceivingBehavior;

import de.tudarmstadt.ukp.clarin.webanno.api.DocumentService;
import de.tudarmstadt.ukp.clarin.webanno.api.ProjectService;
import de.tudarmstadt.ukp.clarin.webanno.api.annotation.exception.NotEditableException;
import de.tudarmstadt.ukp.clarin.webanno.api.annotation.exception.ValidationException;
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import de.tudarmstadt.ukp.clarin.webanno.support.uima.ICasUtil;
import de.tudarmstadt.ukp.clarin.webanno.support.wicket.DecoratedObject;
import de.tudarmstadt.ukp.clarin.webanno.ui.core.page.ProjectPageBase;
import de.tudarmstadt.ukp.inception.documents.api.DocumentService;
import de.tudarmstadt.ukp.inception.editor.action.AnnotationActionHandler;
import de.tudarmstadt.ukp.inception.rendering.editorstate.AnnotatorState;
import de.tudarmstadt.ukp.inception.rendering.vmodel.VID;
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import de.tudarmstadt.ukp.clarin.webanno.api.annotation.config.AnnotationAutoConfiguration;
import de.tudarmstadt.ukp.clarin.webanno.api.config.AnnotationSchemaProperties;
import de.tudarmstadt.ukp.clarin.webanno.api.config.RepositoryProperties;
import de.tudarmstadt.ukp.clarin.webanno.model.AnnotationLayer;
import de.tudarmstadt.ukp.clarin.webanno.model.Mode;
import de.tudarmstadt.ukp.clarin.webanno.model.Project;
import de.tudarmstadt.ukp.clarin.webanno.support.ApplicationContextProvider;
import de.tudarmstadt.ukp.inception.documents.api.RepositoryProperties;
import de.tudarmstadt.ukp.inception.preferences.Key;
import de.tudarmstadt.ukp.inception.preferences.PreferencesService;
import de.tudarmstadt.ukp.inception.rendering.coloring.ColoringService;
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8 changes: 0 additions & 8 deletions inception/inception-api/pom.xml
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<groupId>de.tudarmstadt.ukp.inception.app</groupId>
<artifactId>inception-api-formats</artifactId>
</dependency>
<dependency>
<groupId>de.tudarmstadt.ukp.inception.app</groupId>
<artifactId>inception-annotation-storage-api</artifactId>
</dependency>
<dependency>
<groupId>de.tudarmstadt.ukp.inception.app</groupId>
<artifactId>inception-model</artifactId>
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<groupId>org.apache.wicket</groupId>
<artifactId>wicket-core</artifactId>
</dependency>
<dependency>
<groupId>org.apache.wicket</groupId>
<artifactId>wicket-util</artifactId>
</dependency>

<dependency>
<groupId>org.dkpro.core</groupId>
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* See the License for the specific language governing permissions and
* limitations under the License.
*/
/**
* Provides Interfaces for different dao method implementations.
*/
package de.tudarmstadt.ukp.clarin.webanno.api;
package de.tudarmstadt.ukp.clarin.webanno.api.config;

import org.springframework.boot.context.properties.EnableConfigurationProperties;
import org.springframework.context.annotation.Configuration;

@Configuration
@EnableConfigurationProperties({ AnnotationSchemaPropertiesImpl.class })
public class AnnotationSchemaAutoConfiguration
{
// No Beans
}
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/**
* <p>
* This class is exposed as a Spring Component via {@link RepositoryAutoConfiguration}.
* This class is exposed as a Spring Component via {@link AnnotationSchemaAutoConfiguration}.
* </p>
*/
@ConfigurationProperties("ui")
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@@ -1,2 +1,2 @@
org.springframework.boot.autoconfigure.EnableAutoConfiguration=\
de.tudarmstadt.ukp.clarin.webanno.api.config.RepositoryAutoConfiguration
de.tudarmstadt.ukp.clarin.webanno.api.config.AnnotationSchemaAutoConfiguration
2 changes: 1 addition & 1 deletion inception/inception-app-webapp/pom.xml
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</dependency>
<dependency>
<groupId>de.tudarmstadt.ukp.inception.app</groupId>
<artifactId>inception-api</artifactId>
<artifactId>inception-documents-api</artifactId>
</dependency>
<dependency>
<groupId>de.tudarmstadt.ukp.inception.app</groupId>
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import org.springframework.security.web.session.HttpSessionEventPublisher;
import org.springframework.web.filter.OncePerRequestFilter;

import de.tudarmstadt.ukp.clarin.webanno.api.config.RepositoryProperties;
import de.tudarmstadt.ukp.clarin.webanno.support.logging.LoggingFilter;
import de.tudarmstadt.ukp.inception.documents.api.RepositoryProperties;

@Configuration
public class InceptionServletContextInitializer
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import org.springframework.context.ApplicationContextAware;
import org.springframework.stereotype.Component;

import de.tudarmstadt.ukp.clarin.webanno.api.config.RepositoryProperties;
import de.tudarmstadt.ukp.clarin.webanno.support.logging.Logging;
import de.tudarmstadt.ukp.inception.documents.api.RepositoryProperties;
import picocli.CommandLine;
import picocli.CommandLine.Command;
import picocli.CommandLine.IFactory;
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<artifactId>inception-documents</artifactId>
<version>30.0-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>de.tudarmstadt.ukp.inception.app</groupId>
<artifactId>inception-documents-api</artifactId>
<version>30.0-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>de.tudarmstadt.ukp.inception.app</groupId>
<artifactId>inception-api-editor</artifactId>
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2 changes: 1 addition & 1 deletion inception/inception-concept-linking/pom.xml
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</dependency>
<dependency>
<groupId>de.tudarmstadt.ukp.inception.app</groupId>
<artifactId>inception-api</artifactId>
<artifactId>inception-documents-api</artifactId>
</dependency>

<dependency>
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import org.springframework.context.annotation.Configuration;
import org.springframework.context.annotation.Lazy;

import de.tudarmstadt.ukp.clarin.webanno.api.config.RepositoryProperties;
import de.tudarmstadt.ukp.inception.conceptlinking.feature.CasingFeatureGenerator;
import de.tudarmstadt.ukp.inception.conceptlinking.feature.EntityRankingFeatureGenerator;
import de.tudarmstadt.ukp.inception.conceptlinking.feature.FrequencyFeatureGenerator;
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import de.tudarmstadt.ukp.inception.conceptlinking.recommender.NamedEntityLinkerFactory;
import de.tudarmstadt.ukp.inception.conceptlinking.service.ConceptLinkingService;
import de.tudarmstadt.ukp.inception.conceptlinking.service.ConceptLinkingServiceImpl;
import de.tudarmstadt.ukp.inception.documents.api.RepositoryProperties;
import de.tudarmstadt.ukp.inception.kb.KnowledgeBaseService;
import de.tudarmstadt.ukp.inception.kb.config.KnowledgeBaseServiceAutoConfiguration;
import de.tudarmstadt.ukp.inception.recommendation.api.RecommendationService;
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import java.io.File;
import java.util.Map;

import de.tudarmstadt.ukp.clarin.webanno.api.config.RepositoryProperties;
import de.tudarmstadt.ukp.inception.conceptlinking.config.EntityLinkingServiceAutoConfiguration;
import de.tudarmstadt.ukp.inception.conceptlinking.model.CandidateEntity;
import de.tudarmstadt.ukp.inception.conceptlinking.util.FileUtils;
import de.tudarmstadt.ukp.inception.documents.api.RepositoryProperties;

/**
* Assigns frequency priors from a pre-defined dictionary.
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import com.github.benmanes.caffeine.cache.Caffeine;
import com.github.benmanes.caffeine.cache.LoadingCache;

import de.tudarmstadt.ukp.clarin.webanno.api.config.RepositoryProperties;
import de.tudarmstadt.ukp.inception.conceptlinking.config.EntityLinkingProperties;
import de.tudarmstadt.ukp.inception.conceptlinking.model.CandidateEntity;
import de.tudarmstadt.ukp.inception.conceptlinking.model.Property;
import de.tudarmstadt.ukp.inception.conceptlinking.model.SemanticSignature;
import de.tudarmstadt.ukp.inception.conceptlinking.util.FileUtils;
import de.tudarmstadt.ukp.inception.documents.api.RepositoryProperties;
import de.tudarmstadt.ukp.inception.kb.KnowledgeBaseService;
import de.tudarmstadt.ukp.inception.kb.event.KnowledgeBaseConfigurationChangedEvent;
import de.tudarmstadt.ukp.inception.kb.model.KnowledgeBase;
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import org.springframework.context.event.EventListener;
import org.springframework.core.annotation.AnnotationAwareOrderComparator;

import de.tudarmstadt.ukp.clarin.webanno.api.config.RepositoryProperties;
import de.tudarmstadt.ukp.clarin.webanno.model.Project;
import de.tudarmstadt.ukp.clarin.webanno.support.logging.BaseLoggers;
import de.tudarmstadt.ukp.clarin.webanno.support.wicket.WicketUtil;
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import de.tudarmstadt.ukp.inception.conceptlinking.model.CandidateEntity;
import de.tudarmstadt.ukp.inception.conceptlinking.ranking.BaselineRankingStrategy;
import de.tudarmstadt.ukp.inception.conceptlinking.util.FileUtils;
import de.tudarmstadt.ukp.inception.documents.api.RepositoryProperties;
import de.tudarmstadt.ukp.inception.kb.ConceptFeatureValueType;
import de.tudarmstadt.ukp.inception.kb.KnowledgeBaseService;
import de.tudarmstadt.ukp.inception.kb.RepositoryType;
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import org.springframework.boot.test.autoconfigure.orm.jpa.TestEntityManager;
import org.springframework.transaction.annotation.Transactional;

import de.tudarmstadt.ukp.clarin.webanno.api.config.RepositoryProperties;
import de.tudarmstadt.ukp.clarin.webanno.model.Project;
import de.tudarmstadt.ukp.inception.conceptlinking.config.EntityLinkingPropertiesImpl;
import de.tudarmstadt.ukp.inception.conceptlinking.util.TestFixtures;
import de.tudarmstadt.ukp.inception.documents.api.RepositoryProperties;
import de.tudarmstadt.ukp.inception.kb.KnowledgeBaseService;
import de.tudarmstadt.ukp.inception.kb.KnowledgeBaseServiceImpl;
import de.tudarmstadt.ukp.inception.kb.config.KnowledgeBaseProperties;
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