Clean dataset and add plot options #45
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| on: [ push, pull_request ] | |
| name: Build | |
| jobs: | |
| build_and_test: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| arch: [x86_64, aarch64] | |
| cpu_instr: [non_SIMD, SSE2, AVX2, NEON] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Build trimal for Linux x86_64 | |
| if: matrix.arch == 'x86_64' && matrix.cpu_instr == 'non_SIMD' | |
| run: cmake . -DDISABLE_SSE2=1 -DDISABLE_AVX2=1 && make && file bin/trimal && file bin/readal && | |
| ./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh | |
| - name: Build trimal for Linux x86_64 and SSE2 | |
| if: matrix.arch == 'x86_64' && matrix.cpu_instr == 'SSE2' | |
| run: cmake . -DDISABLE_AVX2=1 && make && file bin/trimal && file bin/readal && | |
| ./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh | |
| - name: Build trimal for Linux x86_64 and AVX2 | |
| if: matrix.arch == 'x86_64' && matrix.cpu_instr == 'AVX2' | |
| run: cmake . -DDISABLE_SSE2=1 && make && file bin/trimal && file bin/readal && | |
| ./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh | |
| - name: Build trimal for Linux aarch64 | |
| if: matrix.arch == 'aarch64' && matrix.cpu_instr == 'non_SIMD' | |
| uses: uraimo/run-on-arch-action@v2 | |
| with: | |
| arch: ${{ matrix.arch }} | |
| distro: ubuntu20.04 | |
| githubToken: ${{ github.token }} | |
| dockerRunArgs: | | |
| --volume "${PWD}:/trimal" | |
| install: | | |
| apt-get update -q -y | |
| apt-get install -q -y cmake make g++ file | |
| run: | | |
| cmake . -DDISABLE_NEON=1 -DDISABLE_SSE2=1 -DDISABLE_AVX2=1 && make && file bin/trimal && file bin/readal && | |
| ./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh | |
| - name: Build trimal for Linux aarch64 and NEON | |
| if: matrix.arch == 'aarch64' && matrix.cpu_instr == 'NEON' | |
| uses: uraimo/run-on-arch-action@v2 | |
| with: | |
| arch: ${{ matrix.arch }} | |
| distro: ubuntu20.04 | |
| githubToken: ${{ github.token }} | |
| dockerRunArgs: | | |
| --volume "${PWD}:/trimal" | |
| install: | | |
| apt-get update -q -y | |
| apt-get install -q -y cmake make g++ file | |
| run: | | |
| cmake . -DDISABLE_SSE2=1 -DDISABLE_AVX2=1 && make && file bin/trimal && file bin/readal && | |
| ./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh |