Add "compare set" and backtranslation to incompatibilities #190
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| on: | |
| push: | |
| paths: | |
| - '.github/workflows/build.yml' | |
| - 'CMakeLists.txt' | |
| - 'dataset/**' | |
| - 'include/**' | |
| - 'source/**' | |
| - 'scripts/**' | |
| - 'tests/**' | |
| pull_request: | |
| paths: | |
| - '.github/workflows/build.yml' | |
| - 'CMakeLists.txt' | |
| - 'dataset/**' | |
| - 'include/**' | |
| - 'scripts/**' | |
| - 'source/**' | |
| - 'tests/**' | |
| name: Build | |
| jobs: | |
| build_and_test: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| arch: [x86, x86_64, armv7, aarch64] | |
| cpu_instr: [non-SIMD, SSE2, auto-selected] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - name: Setup Alpine Linux for x86 | |
| if: matrix.arch == 'x86' | |
| uses: jirutka/setup-alpine@v1 | |
| with: | |
| arch: x86 | |
| packages: > | |
| cmake | |
| file | |
| g++ | |
| make | |
| shell-name: alpine-x86.sh | |
| - name: Build trimal for Linux x86 | |
| if: matrix.arch == 'x86' && matrix.cpu_instr == 'non-SIMD' | |
| run: cmake . -DDISABLE_SSE2=1 -DDISABLE_AVX2=1 && make && file bin/trimal && file bin/readal && | |
| ./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh | |
| shell: alpine-x86.sh {0} | |
| - name: Build trimal for Linux x86 and SSE2 | |
| if: matrix.arch == 'x86' && matrix.cpu_instr == 'SSE2' | |
| run: cmake . -DDISABLE_AVX2=1 && make && file bin/trimal && file bin/readal && | |
| ./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh | |
| shell: alpine-x86.sh {0} | |
| - name: Build trimal for Linux x86 and auto-selected SIMD (AVX2 if available) | |
| if: matrix.arch == 'x86' && matrix.cpu_instr == 'auto-selected' | |
| run: cmake . && make && file bin/trimal && file bin/readal && | |
| ./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh | |
| shell: alpine-x86.sh {0} | |
| - name: Build trimal for Linux x86_64 | |
| if: matrix.arch == 'x86_64' && matrix.cpu_instr == 'non-SIMD' | |
| run: cmake . -DDISABLE_SSE2=1 -DDISABLE_AVX2=1 && make && file bin/trimal && file bin/readal && | |
| ./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh | |
| - name: Build trimal for Linux x86_64 and SSE2 | |
| if: matrix.arch == 'x86_64' && matrix.cpu_instr == 'SSE2' | |
| run: cmake . -DDISABLE_AVX2=1 && make && file bin/trimal && file bin/readal && | |
| ./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh | |
| - name: Build trimal for Linux x86_64 and auto-selected SIMD (AVX2 if available) | |
| if: matrix.arch == 'x86_64' && matrix.cpu_instr == 'auto-selected' | |
| run: cmake . && make && file bin/trimal && file bin/readal && | |
| ./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh | |
| - name: Setup Alpine Linux for armv7 | |
| if: matrix.arch == 'armv7' | |
| uses: jirutka/setup-alpine@v1 | |
| with: | |
| arch: armv7 | |
| packages: > | |
| cmake | |
| file | |
| g++ | |
| make | |
| shell-name: alpine-armv7.sh | |
| - name: Build trimal for Linux armv7 | |
| if: matrix.arch == 'armv7' && matrix.cpu_instr == 'non-SIMD' | |
| run: cmake . -DDISABLE_NEON=1 && make && file bin/trimal && file bin/readal && | |
| ./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh | |
| shell: alpine-armv7.sh {0} | |
| - name: Build trimal for Linux armv7 and auto-selected SIMD (NEON) | |
| if: matrix.arch == 'armv7' && matrix.cpu_instr == 'auto-selected' | |
| run: cmake . && make && file bin/trimal && file bin/readal && | |
| ./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh | |
| shell: alpine-armv7.sh {0} | |
| - name: Build trimal for Linux aarch64 | |
| if: matrix.arch == 'aarch64' && matrix.cpu_instr == 'non-SIMD' | |
| uses: uraimo/run-on-arch-action@v2 | |
| # Emulate ARM architecture since it's not natively supported by GitHub. | |
| # Warning about image and host platforms not matching may be ignored (https://github.com/uraimo/run-on-arch-action/issues/127#issuecomment-1605691328) | |
| with: | |
| arch: ${{ matrix.arch }} | |
| distro: ubuntu20.04 | |
| githubToken: ${{ github.token }} | |
| dockerRunArgs: | | |
| --volume "${PWD}:/trimal" | |
| install: | | |
| apt-get update -q -y | |
| apt-get install -q -y cmake make g++ file | |
| run: | | |
| cmake . -DDISABLE_NEON=1 && make && file bin/trimal && file bin/readal && | |
| ./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh | |
| - name: Build trimal for Linux aarch64 and auto-selected SIMD (NEON) | |
| if: matrix.arch == 'aarch64' && matrix.cpu_instr == 'auto-selected' | |
| uses: uraimo/run-on-arch-action@v2 | |
| # Emulate ARM architecture since it's not natively supported by GitHub. | |
| # Warning about image and host platforms not matching may be ignored (https://github.com/uraimo/run-on-arch-action/issues/127#issuecomment-1605691328) | |
| with: | |
| arch: ${{ matrix.arch }} | |
| distro: ubuntu20.04 | |
| githubToken: ${{ github.token }} | |
| dockerRunArgs: | | |
| --volume "${PWD}:/trimal" | |
| install: | | |
| apt-get update -q -y | |
| apt-get install -q -y cmake make g++ file | |
| run: | | |
| cmake . && make && file bin/trimal && file bin/readal && | |
| ./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh |