Edit file to force workflow run #184
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| on: | |
| push: | |
| paths: | |
| - 'dataset/**' | |
| - 'scripts/**' | |
| - 'source/**' | |
| pull_request: | |
| paths: | |
| - 'dataset/**' | |
| - 'scripts/**' | |
| - 'source/**' | |
| name: Build | |
| jobs: | |
| download_and_test_ubuntu: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| arch: [x86_64, aarch64] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Download Release Binaries | |
| run: | | |
| curl -L -o trimal.zip https://github.com/inab/trimal/releases/download/v1.5.0/trimAl_Linux_x86-64.zip && | |
| unzip trimal.zip && mv trimAl_Linux_x86-64/* source/ | |
| - name: Test trimal for Linux x86_64 | |
| if: matrix.arch == 'x86_64' | |
| run: file source/trimal && file source/readal && file source/statal && ./scripts/generate_trimmed_msas.sh && | |
| ./scripts/compare_trimmed_msas.sh | |
| - name: Build trimal for Linux aarch64 | |
| if: matrix.arch == 'aarch64' | |
| uses: uraimo/run-on-arch-action@v2 | |
| with: | |
| arch: ${{ matrix.arch }} | |
| distro: ubuntu20.04 | |
| githubToken: ${{ github.token }} | |
| dockerRunArgs: | | |
| --volume "${PWD}:/trimal" | |
| install: | | |
| apt-get update -q -y | |
| apt-get install -q -y file | |
| run: | | |
| file source/trimal && file source/readal && file source/statal && ./scripts/generate_trimmed_msas.sh && | |
| ./scripts/compare_trimmed_msas.sh | |
| build_and_test_ubuntu: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| arch: [x86_64, aarch64] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Build trimal for Linux x86_64 | |
| if: matrix.arch == 'x86_64' | |
| run: cd source && make all && file trimal && file readal && file statal && | |
| cd .. && ./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh | |
| - name: Build trimal for Linux aarch64 | |
| if: matrix.arch == 'aarch64' | |
| uses: uraimo/run-on-arch-action@v2 | |
| with: | |
| arch: ${{ matrix.arch }} | |
| distro: ubuntu20.04 | |
| githubToken: ${{ github.token }} | |
| dockerRunArgs: | | |
| --volume "${PWD}:/trimal" | |
| install: | | |
| apt-get update -q -y | |
| apt-get install -q -y make g++ file | |
| run: | | |
| cd /trimal/source && make all && file trimal && file readal && file statal && | |
| cd .. && ./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh | |
| download_and_test_windows: | |
| runs-on: windows-2022 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Download Release Binaries | |
| run: | | |
| curl -L -o trimal.zip https://github.com/inab/trimal/releases/download/v1.5.0/trimAl_Windows_x86-64.zip | |
| - name: Unzip Binaries | |
| run: | | |
| powershell -Command "Expand-Archive -Path trimal.zip -DestinationPath ." | |
| - name: Verify Binaries | |
| run: | | |
| Move-Item -Path .\trimal.exe -Destination .\source\ | |
| Get-Command .\source\trimal.exe | |
| - name: Run generate_trimmed_msas.ps1 | |
| run: | | |
| powershell -ExecutionPolicy Bypass -File .\scripts\generate_trimmed_msas.ps1 | |
| - name: Run compare_trimmed_msas.ps1 | |
| run: | | |
| powershell -ExecutionPolicy Bypass -File .\scripts\compare_trimmed_msas.ps1 | |
| build_and_test_windows: | |
| runs-on: windows-2022 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up MSYS2 | |
| uses: msys2/setup-msys2@v2 | |
| with: | |
| msystem: MINGW64 | |
| update: true | |
| install: >- | |
| make | |
| mingw-w64-x86_64-gcc | |
| file | |
| - name: Build trimal for Windows x86_64 | |
| run: | | |
| cd source | |
| make -f makefile.Windows | |
| file trimal.exe | |
| file readal.exe | |
| file statal.exe | |
| - name: Run generate_trimmed_msas.ps1 | |
| run: | | |
| powershell -ExecutionPolicy Bypass -File .\scripts\generate_trimmed_msas.ps1 | |
| - name: Run compare_trimmed_msas.ps1 | |
| run: | | |
| powershell -ExecutionPolicy Bypass -File .\scripts\compare_trimmed_msas.ps1 |